clean_iterNMF: Extract, cleanup, and merge iter_NMF results

In naikai/sake: Single-cell RNA-Seq Analysis and Klustering Evaluation

Extract, cleanup, and merge iter_NMF results

Description

We will only get grouping info for now

Usage

clean_iterNMF(inmf_res, rawdata, cor.method = "spearman",
  cor.thresh = 0.9, ctriod.topN = 5000, ctroid.math = "mean",
  return.all = FALSE)

Arguments

rawdata	gene count table for calculating centroids based on the clustering results
cor.method	method for correlation calculation, default: spearman correlation
cor.thresh	correlation threshold for merging subclusters
ctroid.math	method for getting centroid, default: mean
iter_nmf	vairous NMF res in a list format
ctroid.topN	number of top Genes to extract for centroid comparison

Examples

clean_iterNMF(inmf_res, rawdata)

naikai/sake documentation built on Feb. 15, 2023, 11 p.m.