nmf_select_best_k: Select the best k from multiple consensus NMF run
In naikai/sake: Single-cell RNA-Seq Analysis and Klustering Evaluation
nmf_select_best_k R Documentation
Select the best k from multiple consensus NMF run
Description
X = W x H
W is the feature matrix, H is the sample matrix
After NMF run, use Cophenatic index to select the best k
highest value after k=2
Usage
nmf_select_best_k(res, type = "consensus")
Arguments
res
NMF run results
Examples
nmf_select_best_k(nmf_res)
naikai/sake documentation built on Feb. 15, 2023, 11 p.m.
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| nmf_select_best_k | R Documentation |
Select the best k from multiple consensus NMF run
Description
X = W x H W is the feature matrix, H is the sample matrix After NMF run, use Cophenatic index to select the best k highest value after k=2
Usage
nmf_select_best_k(res, type = "consensus")
Arguments
res |
NMF run results |
Examples
nmf_select_best_k(nmf_res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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