API for naikai/sake
Single-cell RNA-Seq Analysis and Klustering Evaluation

Global functions
NetConnectivity Man page Source code
Usoskin Man page
VERBOSE Source code
affy_probe_to_gene_symbol Man page Source code
assign_label_cex Man page Source code
cal_entropy Man page Source code
centroid_classify Man page Source code
clean_iterNMF Man page Source code
clust_by_hier Man page Source code
clust_silhouette Source code
comp_module_genelist Man page Source code
compare_group Man page Source code
compare_groups_stats Man page Source code
connect_gap_modules Man page Source code
corModule Source code
corModuleUI Man page Source code
cor_mtest Man page Source code
create.brewer.color Man page Source code
create.manual.color Man page Source code
create_centroid Man page Source code
def_net_module2 Man page Source code
def_net_modules Man page Source code
deseq_norm Man page Source code
detect_genecnt_id Man page Source code
detect_genecnt_platform Man page Source code
ext_gene_function Man page Source code
extract_centroid_from_nmf_res Source code
extract_data_by_mad Man page Source code
extract_data_by_math Man page Source code
feature Source code
featureUI Source code
gene_convert_human_to_mouse Man page Source code
gene_convert_mouse_to_human Man page Source code
get_ClaNC_group Man page Source code
getcentroid Source code
heatmap.3 Man page Source code
hello Man page
is.whole Man page Source code
iter_nmf Man page Source code
load_genelist Man page Source code
load_geneset Man page Source code
module_finder Man page Source code
multiplot Man page Source code
mutual_info_from_confmatrix Man page Source code
mutual_info_from_vector Man page Source code
my.write.matrix Man page Source code
myHeatmap.3 Man page Source code
myNMF Man page Source code
myboxplot Man page Source code
myd3Heatmap Man page Source code
myfread.table Man page Source code
name_to_color Man page Source code
network Source code
networkUI Source code
nmf_estim_plot Man page Source code
nmf_extract_feature Man page Source code
nmf_extract_group Man page Source code
nmf_plot Man page Source code
nmf_select_best_k Man page Source code
nmf_silhouette_plot Man page Source code
nmf_summary Man page Source code
nmfres Source code
nmfresUI Source code
norm_factors Man page Source code
parse_tsne_res Man page Source code
pcaplot Man page Source code
plot_cor_subiNMF Source code
plot_gene_expression Man page Source code
plot_modules Man page Source code
plot_tsne Man page Source code
predict_from_centroid Man page Source code
preprocessNetCon Man page Source code
reorderfun Man page Source code
rmv_constant_0 Man page Source code
rpm Man page Source code
run_CV Man page Source code
run_ClaNC Man page Source code
run_CoExpression Man page Source code
run_DESeq2 Man page Source code
run_icash Man page Source code
run_tsne Man page Source code
sake Man page
sake-package Man page
scale_data Man page Source code
screenshot_plotly Man page Source code
select_n_pct Man page Source code
select_top_n Man page Source code
server Source code
simpleCap Man page Source code
summarize_module2 Man page Source code
top_genes Man page Source code
uq Man page Source code
vst Man page Source code
weighted.silhouette Man page Source code
wgcna_ext_hubgenes Man page Source code
naikai/sake documentation built on July 27, 2017, 4:07 a.m.