wgcna_ext_hubgenes: Extract hub genes in each module by using WGCNA

In naikai/sake: Single-cell RNA-Seq Analysis and Klustering Evaluation

Extract hub genes in each module by using WGCNA

Description

Weighted gene correlation network analysis

Usage

wgcna_ext_hubgenes(datExpr, MM.cutoff = 0.7, math.cutoff.quantile = 3,
  math = "mad", top.math = 1500, plot = F, save.data = F,
  prefix = "MM_vs_MAD")

Arguments

datExpr	gene count data
MM.cutoff	module membership cutoff
math.cutoff.quantile	which quantile to use as min cutoff
math	default is 'mad': can be 'mean', 'median', 'iqr'

Examples

wgcna_ext_hubgenes(datExpr)

naikai/sake documentation built on Feb. 15, 2023, 11 p.m.