run_tsne: Use multi-core to run t-SNE

In naikai/sake: Single-cell RNA-Seq Analysis and Klustering Evaluation

Use multi-core to run t-SNE

Description

This function allows you to run t-SNE using multi-cores

Usage

run_tsne(data, iter = 10, perplexity = 10, dims = 2, theta = 0.5,
  initial_dims = 50, cores = 1)

Arguments

data	expression data
iter	how many iterations
perplexity	perplexity
dims	how many dimensions
cores	how many cores to run t-SNE

Examples

run_tsne(mtcars, iter=200, perplexity = 2, cores=4)

naikai/sake documentation built on Feb. 15, 2023, 11 p.m.