summarize_module2: Identify the the edge of the modules (blocks) within the net...

In naikai/sake: Single-cell RNA-Seq Analysis and Klustering Evaluation

Identify the the edge of the modules (blocks) within the net connectivity matrix

Description

Run for loops to detect the block Detect edge genes in each block and their gene idx Go back to the original 100x100 matrix and use the edge genes (idx) to define block

Usage

summarize_module2(core_sub_jaccard_dist, old, current, blk_cnt, genenames,
  original_names, res_summary, res_genelist, size, min.size = 5,
  start_idx)

Arguments

core_sub_jaccard_dist

jaccard distance for sub core genes

Examples

summarize_module(core_sub_jaccard_dist, sub_jaccard_dist, min.connectivity=0.2, min.size=5)

naikai/sake documentation built on Feb. 15, 2023, 11 p.m.