View source: R/network_utils.R
run_CoExpression | R Documentation |
Preprocess the connecitivty matrix based on mean connectivity and binary switch 1. First try to remove columns (rows) that have median expression 75 2. Convert the matrix into binary based on quantile connectivity'
run_CoExpression(expdata, thresh = "soft", tao = 0.7, beta = 10, method = "Pearson", folderName0 = "Module", avg_con_thresh = 0.00015, save.data = F)
tao |
threshold for hard transformation |
beta |
parameter for soft power transformation |
data |
Input expression data |
num_features |
Number of top high connective genes to be used |
run_CoExpression(expdata)
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