plot_tsne: Plot t-SNE results

In naikai/sake: Single-cell RNA-Seq Analysis and Klustering Evaluation

Plot t-SNE results

Description

This function allows you to plot t-SNE results

Usage

plot_tsne(tsne_out, color = NULL, alpha = 1, title = "tSNE",
  brewer = "naikai", add.centroids = F, add.line = F,
  add.errorbar = F, add.label = F, label.size = 3, conf = F,
  add.legend = F, save.plot = T, real.plot = T, point.size = 3,
  centroid.size = 6)

Arguments

tsne_out	t-SNE results from run_tSNE
color	color scheme for each dot
alpha	alpha value for each dot
title	figure title
brewer	brewer color

Examples

tsne_out <- run_tsne(mtcar, perplexity=3)
tsne_out <- parse_tsne_res(tsne_out)
plot_tsne(tsne_out)

naikai/sake documentation built on Feb. 15, 2023, 11 p.m.