plot3d.boundingbox: Plot a bounding box in 3D

In natverse/nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data

Plot a bounding box in 3D

Description

Plot a bounding box in 3D

Usage

## S3 method for class 'boundingbox'
plot3d(
  x,
  col = "black",
  gridlines = FALSE,
  plotengine = getOption("nat.plotengine"),
  ...
)

Arguments

x	the boundingbox object to plot.
col	The colour of the bounding box lines (default 'black')
gridlines	Whether to display gridlines when using plotly as the backend plotting engine (default: FALSE)
plotengine	the plotting backend engine to use either 'rgl' or 'plotly'.
...	additional arguments to pass to segments3d.

Value

A list of rgl object IDs (as returned by segments3d) or a plotly object.

See Also

boundingbox

Examples

# find the bounding box of all the neurons in a list
boundingbox(kcs20)
boundingbox(kcs20[1:3])

# plot those neurons
plot3d(kcs20)
# ... with their bounding box
plot3d(boundingbox(kcs20))

plot3d(kcs20)
# plot bounding box (in matching colours) for each neuron
# NB makes use of nlapply/neuronlist in slightly unsusual context -
# plot3d.neuronlist can cope with lists containing anything with
# a valid plot3d method.
plot3d(nlapply(kcs20,boundingbox))

natverse/nat documentation built on Oct. 19, 2024, 11:37 a.m.