navinlabcode/copykat: COPYKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNA-seq data

COPYKAT is a computational tool using integrative Bayesian approaches to identify genome-wide aneuploidy at 5MB resolution in single cells to separate aneuploid (tumor) cells from diploid (normal) cells, and tumor subclones using high-throughput sc-RNAseq data.

install.packages("remotes")
remotes::install_github("navinlabcode/copykat")