convert.all.bins.hg20: conver gene by cell matrix to genomic bins by cells matrix.

In navinlabcode/copykat: COPYKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNA-seq data

conver gene by cell matrix to genomic bins by cells matrix.

Description

conver gene by cell matrix to genomic bins by cells matrix.

Usage

convert.all.bins.hg20(DNA.mat, RNA.mat, n.cores)

Arguments

DNA.mat	input target bins, provided by copycat, with 220KB windows.
RNA.mat	RNA data matrix with genes in rows.
n.cores	number of cores for parallel computing.
full.anno	annotation file for all known genes, automatically loaded in copycat.

Value

adjusted datamatrix with bins in rows, cells in columns.

Examples

test.cab <- convert.all.bins(DNA.mat, RNA.mat, n.cores=10)

test.cab.uber <- test.cab$RNAadj

navinlabcode/copykat documentation built on June 29, 2024, 2:31 a.m.