CNA.MCMC: MCMC segmentation.

In navinlabcode/copykat: COPYKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNA-seq data

MCMC segmentation.

Description

MCMC segmentation.

Usage

CNA.MCMC(clu, fttmat, bins, cut.cor, n.cores)

Arguments

clu	predefined clusters of cells.
fttmat	transformed normalized data matrix; genes in rows; cell names in columns.
bins	minimal number of bins per segment.
cut.cor	minimal KS difference to call breakpoints.
n.cores	number of cores for parallel computing.
sam.name	given sample name.

Value

1) segmented CNA data matrix; 2) vector of breakpoints.

Examples

test.mcmc <- CNA.MCMC(clu,fttmat, bins, cut.cor, n.cores=10)

test.mcmc.seg.mat <- test.mamc$logCNA

navinlabcode/copykat documentation built on June 29, 2024, 2:31 a.m.