annotateGenes.mm10: annotate genes with reference to hg38.
In navinlabcode/copykat: COPYKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNA-seq data
View source: R/annotateGenes.mm10.R
annotateGenes.mm10 R Documentation
annotate genes with reference to hg38.
Description
annotate genes with reference to hg38.
Usage
annotateGenes.mm10(mat, ID.type = "S", full.anno = full.anno.mm10)
Arguments
mat
data matrix; genes in rows; cell names in columns.
ID.type
gene id type: Symbol or Ensemble.
full.anno
annotation file for all known genes, automatically loaded in copycat.
Value
annotations of each genes in rows with chrom and positions.
Examples
test.anno.mat <- annotateGenes.hg20(mat=matx, ID.type="ENSEMBLE_id", full.anno = full.anno)
navinlabcode/copykat documentation built on June 29, 2024, 2:31 a.m.
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View source: R/annotateGenes.mm10.R
| annotateGenes.mm10 | R Documentation |
annotate genes with reference to hg38.
Description
annotate genes with reference to hg38.
Usage
annotateGenes.mm10(mat, ID.type = "S", full.anno = full.anno.mm10)
Arguments
mat |
data matrix; genes in rows; cell names in columns. |
ID.type |
gene id type: Symbol or Ensemble. |
full.anno |
annotation file for all known genes, automatically loaded in copycat. |
Value
annotations of each genes in rows with chrom and positions.
Examples
test.anno.mat <- annotateGenes.hg20(mat=matx, ID.type="ENSEMBLE_id", full.anno = full.anno)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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