Man pages for navinlabcode/copykat
COPYKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNA-seq data
| annotateGenes.hg20 | annotate genes with reference to hg38. |
| annotateGenes.mm10 | annotate genes with reference to hg38. |
| baseline.GMM | pre-define a group of normal cells with GMM. |
| baseline.norm.cl | find a cluster of diploid cells with integrative clustering... |
| CNA.MCMC | MCMC segmentation. |
| convert.all.bins.hg20 | conver gene by cell matrix to genomic bins by cells matrix. |
| copykat | copycat main_func. |
| exp.rawdata | raw UMI count matrix. |
| heatmap.3 | heatmap3 function. |
