run_core: Run the core model

In ncahill89/BTF:

Description

Run the core model

Usage

run_core(
  obj,
  core_species = NULL,
  prior_el = NULL,
  dx = 0.2,
  ChainNums = seq(1, 3),
  n.iter = 15000,
  n.burnin = 1000,
  n.thin = 7,
  validation.run = FALSE,
  use_uniform_prior = FALSE
)

Arguments

obj	An object of class BTF from run_modern
dx	Parameter for spacing of spline knots
ChainNums	The number of MCMC chains
n.iter	The number of MCMC iterations
n.burnin	The number of burnin MCMC samples
n.thin	The number of thinning
core_species.csv	A .csv file containing core species counts
run.on.server	Set to TRUE for running chains in parallel on a server
use.informative.priors	Set to TRUE if prior information is available

Value

Output will be saved to output.dir

Examples

coremodel<-runcore(core_species.csv = "core_species.csv")

ncahill89/BTF documentation built on March 29, 2021, 12:04 p.m.