run_core | R Documentation |
Run the core model
run_core(
obj,
core_species = NULL,
prior_el = NULL,
ChainNums = seq(1, 3),
n.iter = 15000,
n.burnin = 1000,
n.thin = 7,
validation.run = FALSE,
use_uniform_prior = FALSE
)
obj |
An object of class |
core_species |
Dataframe containing core species counts |
prior_el |
prior elevations if available |
ChainNums |
The number of MCMC chains |
n.iter |
The number of MCMC iterations |
n.burnin |
The number of burnin MCMC samples |
n.thin |
The number of thinning |
validation.run |
Set to TRUE if running validation |
use_uniform_prior |
change prior on elevation to be uniform |
a list of objects including SWLI and an mcmc array with posterior samples
test_modern_mod <- run_modern(modern_elevation = NJ_modern_elevation,
modern_species = NJ_modern_species,
n.iter = 10,
n.burnin = 1,
n.thin = 1)
test_core_mod <- run_core(test_modern_mod,
core_species = NJ_core_species,
n.iter = 10,
n.burnin = 1,
n.thin = 1)
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