run_valid: Carry out a validation

In ncahill89/BTF: Run the Bayesian Transfer Function

Carry out a validation

Description

Carry out a validation

Usage

run_valid(
  modern_elevation = NULL,
  modern_species = NULL,
  n_folds = 1,
  use_uniform_prior = FALSE,
  dx = 0.2,
  modern.iter = 40000,
  modern.burnin = 10000,
  modern.thin = 15,
  core.iter = 15000,
  core.burnin = 1000,
  core.thin = 7,
  scale_x = FALSE
)

Arguments

modern_elevation	A dataframe of modern elevations
modern_species	A dataframe of modern counts (to be sorted with sort_modern)
n_folds	Number of folds for CV
use_uniform_prior	change prior on elevation to be uniform
dx	The elevation interval for spacing the spline knots. Defaults to 0.2.
modern.iter	The number of iterations for the modern model
modern.burnin	The number of burnin samples for the modern model
modern.thin	The number of thinning for the modern model
core.iter	The number of iterations for the core model
core.burnin	The number of burnin samples for the core model
core.thin	The number of thinning for the core model
scale_x	Set to TRUE to scale elevation data to have mean 0 and sd 1

Value

A tibble of validation results

ncahill89/BTF documentation built on Oct. 4, 2022, 5:18 a.m.