run_modern | R Documentation |
Run the modern (calibration) model
run_modern(
modern_elevation = NULL,
modern_species = NULL,
scale_x = FALSE,
sigma_z_priors = NULL,
dx = 0.1,
ChainNums = seq(1, 3),
n.iter = 40000,
n.burnin = 10000,
n.thin = 15,
validation.run = FALSE,
fold = 1
)
modern_elevation |
A dataframe of modern elevations |
modern_species |
A dataframe of modern counts (to be sorted with |
scale_x |
Set to TRUE to scale elevation data to have mean 0 and sd 1 |
sigma_z_priors |
priors for foram variability (if available) |
dx |
The elevation interval for spacing the spline knots. Defaults to 0.2 |
ChainNums |
The number of MCMC chains to run |
n.iter |
The number of iterations |
n.burnin |
The number of burnin samples |
n.thin |
The number of thinning |
validation.run |
Defaults to FALSE. Set to TRUE if running a validation |
fold |
Fold number for cross validation (CV) |
a list of objects including data, parameter values and scaling information
test_modern_mod <- run_modern(
modern_elevation = NJ_modern_elevation,
modern_species = NJ_modern_species,
n.iter = 10,
n.burnin = 1,
n.thin = 1
)
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