run_modern: Run the modern (calibration) model

Description Usage Arguments Value Examples

View source: R/F_run_modern.R

Description

Run the modern (calibration) model

Usage

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run_modern(
  modern_elevation = NULL,
  modern_species = NULL,
  dx = 0.2,
  ChainNums = seq(1, 3),
  n.iter = 40000,
  n.burnin = 10000,
  n.thin = 15,
  validation.run = FALSE,
  sigma_z_priors = NULL,
  fold = 1
)

Arguments

dx

The elevation interval for spacing the spline knots. Defaults to 0.2.

ChainNums

The number of MCMC chains to run

n.iter

The number of iterations

n.burnin

The number of burnin samples

n.thin

The number of thinning

modern_elevation.csv

A .csv file location for modern elevations

modern_species.csv

A .csv file location for modern counts (to be sorted with sort_modern)

run.on.server

Set to TRUE if you wish to run the chains in parallel on a server

Value

Nothing is returned, the relevant data will be saved.

Examples

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ncahill89/BTF documentation built on March 29, 2021, 12:04 p.m.