Files in ncats/MultiOmicsGraphPrediction
Network-Based Ensemble Prediction from IntLIM Predictors
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/01_ModelSetup.R
R/02_LearnGraphPredictionModel.R
R/03_PredictUsingLearnedModel.R
R/AllClasses.R
R/compositemodelfunctions.R
R/coregulationgraphfunctions.R
R/metafeaturefunctions.R
R/pairwisepredictionfunctions.R
R/trainingfunctions.R
README.md
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/NCI60_geneDataTest.csv
inst/extdata/NCI60_geneDataTrain.csv
inst/extdata/NCI60_geneFData.csv
inst/extdata/NCI60_input_refs_test.csv
inst/extdata/NCI60_input_refs_train.csv
inst/extdata/NCI60_metabDataTest.csv
inst/extdata/NCI60_metabDataTrain.csv
inst/extdata/NCI60_metabFData.csv
inst/extdata/NCI60_outcomeTest.csv
inst/extdata/NCI60_outcomeTrain.csv
inst/extdata/sim_geneData_test.csv
inst/extdata/sim_geneData_train.csv
inst/extdata/sim_input_refs_test.csv
inst/extdata/sim_input_refs_train.csv
inst/extdata/sim_metabData_test.csv
inst/extdata/sim_metabData_train.csv
inst/extdata/sim_pData_test.csv
inst/extdata/sim_pData_train.csv
man/Backpropagate.Rd
man/BuildCoRegulationGraph.Rd
man/BuildGraphDataFrame.Rd
man/CalculatePredictionCutoffs.Rd
man/CombineSubspaces.Rd
man/CombineSubspacesTest.Rd
man/CompositeModelSet-class.Rd
man/CompositePrediction.Rd
man/ComputeAnalyteCoefMetafeature.Rd
man/ComputeClassificationError.Rd
man/ComputeCosineSimilarity.Rd
man/ComputeGlobalErrorMetafeature.Rd
man/ComputeGlobalErrorMetafeatureTest.Rd
man/ComputeIndividualPerformance.Rd
man/ComputeInteractionCoefMetafeature.Rd
man/ComputeLocalErrorMetafeature.Rd
man/ComputeLocalErrorMetafeatureTest.Rd
man/ComputeMetaFeatureWeights.Rd
man/ComputePDFMetafeature.Rd
man/ComputePathwayMetafeature.Rd
man/ComputePvalMetafeature.Rd
man/ComputeRMSE.Rd
man/ComputeReactionMetafeature.Rd
man/ComputeSignificance.Rd
man/ComputeTScore.Rd
man/CosineSimilarityToTrainingOnSingleDataType.Rd
man/CosineSimilarityToTrainingOnSubspace.Rd
man/DerivativeOfActivation.Rd
man/Dhat.Rd
man/DhatPrime.Rd
man/DoModelSetup.Rd
man/DoModelSetupFromIntLim.Rd
man/DoPrediction.Rd
man/DoSignificancePropagation.Rd
man/DoSingleTrainingIteration.Rd
man/DoTestSetupAndPrediction.Rd
man/DoTestSetupOnly.Rd
man/DoUnweightedTestSetupAndPrediction.Rd
man/FindOptimalSubspaceClustering.Rd
man/FormatInput.Rd
man/GetGlobalErrorCorr.Rd
man/GetMetaFeatures.Rd
man/GetPredictorIDs.Rd
man/GetTestMetaFeatures.Rd
man/InitializeGraphLearningModel.Rd
man/Model-class.Rd
man/ModelInput-class.Rd
man/ModelResults-class.Rd
man/Nhat.Rd
man/NhatPrime.Rd
man/ObtainCompositeModels.Rd
man/ObtainSubgraphNeighborhoods.Rd
man/ObtainUnweightedModel.Rd
man/OneHotEncoding.Rd
man/OptimizeMetaFeatureCombo.Rd
man/Predict.Rd
man/ProjectPredictionsOntoGraph.Rd
man/PruneBackwardStepwise.Rd
man/PruneExhaustive.Rd
man/PruneForwardStepwise.Rd
man/PrunePredictors.Rd
man/PruneStepwiseParallel.Rd
man/RunPairwisePrediction.Rd
man/SplitTrainingAndTesting.Rd
man/computeGradient.Rd
man/computeGradientForAveraging.Rd
vignettes/CancerDataVignette.Rmd
vignettes/SimulatedDataVignette.Rmd
