API for ndbrown6/GAP
Genome Alteration Print (GAP)
| Global functions | |
|---|---|
| CBS_breakpoints_for_GAPconstruction | Man page |
| Centr_CL_annot | Man page |
| CopyNumber_and_Genotype | Man page |
| CopyNumber_and_GenotypeWOfitting | Man page |
| CytoBand | Man page |
| GAP | Man page |
| GAPonNET_template | Man page |
| GAPonNETcoordinates | Man page |
| GAPplot | Man page |
| GAPplot_preliminary | Man page |
| GetGAPtemplateZones | Man page |
| UniteSEG_TMP | Man page |
| UniteSEGtmp_Illum | Man page |
| UniteSEGtmp_one | Man page |
| adjustTMPstableSubclone | Man page |
| checkGermHomozygosities | Man page |
| checkSmallDiscrepancies | Man page |
| fitShortSubclones | Man page |
| fitSmallGermHomozyg | Man page |
| fittingGAP | Man page |
| getBAFforRecognition | Man page |
| getCNrank | Man page |
| getCNwithPrecision | Man page |
| getCenterClusterGAP | Man page |
| getConfidence | Man page |
| getConfidence2 | Man page |
| getGTwithRank | Man page |
| getRecCHR | Man page |
| illiminateShort_FinalPolish | Man page |
| markNETtemplate | Man page |
| plotGAPdensity | Man page |
| shortBreaksToTMP | Man page |
| shrinkReprTMP | Man page |
| shrinkReprTMP2 | Man page |
| smoothNET | Man page |
| subClonalClusters | Man page |
| summaryPlots | Man page |
| summaryPlots_perChrom | Man page |
| summaryStats | Man page |
| updateMeans_FinalPolish | Man page |
