Man pages for ndbrown6/GAP
Genome Alteration Print (GAP)

adjustTMPstableSubcloneadjustTMPstableSubclone
CBS_breakpoints_for_GAPconstructionCBS_breakpoints_for_GAPconstruction
Centr_CL_annotCentr_CL_annot
checkGermHomozygositiescheckGermHomozygosities
checkSmallDiscrepanciescheckSmallDiscrepancies
CopyNumber_and_GenotypeCopyNumber_and_Genotype
CopyNumber_and_GenotypeWOfittingCopyNumber_and_GenotypeWOfitting
CytoBandCytoBand
fitShortSubclonesfitShortSubclones
fitSmallGermHomozygfitSmallGermHomozyg
fittingGAPfittingGAP
GAPGenome Alteration Print (GAP)
GAPonNETcoordinatesGAPonNETcoordinates
GAPonNET_templateGAPonNET_template
GAPplotGAPplot
GAPplot_preliminaryGAPplot_preliminary
getBAFforRecognitiongetBAFforRecognition
getCenterClusterGAPgetCenterClusterGAP
getCNrankgetCNrank
getCNwithPrecisiongetCNwithPrecision
getConfidencegetConfidence
getConfidence2getConfidence2
GetGAPtemplateZonesGetGAPtemplateZones
getGTwithRankgetGTwithRank
getRecCHRgetRecCHR
illiminateShort_FinalPolishilliminateShort_FinalPolish
markNETtemplatemarkNETtemplate
plotGAPdensityplotGAPdensity
shortBreaksToTMPshortBreaksToTMP
shrinkReprTMPshrinkReprTMP
shrinkReprTMP2shrinkReprTMP2
smoothNETsmoothNET
subClonalClusterssubClonalClusters
summaryPlotssummaryPlots
summaryPlots_perChromsummaryPlots_perChrom
summaryStatssummaryStats
UniteSEG_TMPUniteSEG_TMP
UniteSEGtmp_IllumUniteSEGtmp_Illum
UniteSEGtmp_oneUniteSEGtmp_one
updateMeans_FinalPolishupdateMeans_FinalPolish
ndbrown6/GAP documentation built on Feb. 6, 2018, 5 p.m.