Files in ndbrown6/GAP
Genome Alteration Print (GAP)

DESCRIPTION
INDEX
NAMESPACE
R/CBS_breakpoints_and_GAPconstruction.R R/Centr_CL_annot.R R/CopyNumber_and_Genotype.R R/CopyNumber_and_GenotypeWOfitting.R R/GAPonNET_template.R R/GAPonNETcoordinates.R R/GAPplot.R R/GAPplot_preliminary.R R/GetGAPtemplateZones.R R/UniteSEG_TMP.R R/UniteSEGtmp_Illum.R R/UniteSEGtmp_one.R R/adjustTMPstableSubclone.R R/checkGermHomozygosities.R R/checkSmallDiscrepancies.R R/fitShortSubclones.R R/fitSmallGermHomozyg.R R/fittingGAP.R R/getBAFforRecognition.R R/getCNrank.R R/getCNwithPrecision.R R/getCenterClusterGAP.R R/getConfidence.R R/getConfidence2.R R/getGTwithRank.R R/getRecCHR.R R/iliminateShort_FinalPolish.R R/markNETtemplate.R R/plotGAPdensity.R R/shortBreaksToTMP.R R/shrinkReprTMP.R R/shrinkReprTMP2.R R/smoothNET.R R/subClonalClusters.R R/summaryPlots.R R/summaryPlots_perChrom.R R/summaryStats.R R/updateMeans_FinalPolish.R R/zzz.R README.md
data/CytoBand.RData
man/CBS_breakpoints_for_GAPconstruction.Rd man/Centr_CL_annot.Rd man/CopyNumber_and_Genotype.Rd man/CopyNumber_and_GenotypeWOfitting.Rd man/CytoBand.Rd man/GAP.Rd man/GAPonNET_template.Rd man/GAPonNETcoordinates.Rd man/GAPplot.Rd man/GAPplot_preliminary.Rd man/GetGAPtemplateZones.Rd man/UniteSEG_TMP.Rd man/UniteSEGtmp_Illum.Rd man/UniteSEGtmp_one.Rd man/adjustTMPstableSubclone.Rd man/checkGermHomozygosities.Rd man/checkSmallDiscrepancies.Rd man/fitShortSubclones.Rd man/fitSmallGermHomozyg.Rd man/fittingGAP.Rd man/getBAFforRecognition.Rd man/getCNrank.Rd man/getCNwithPrecision.Rd man/getCenterClusterGAP.Rd man/getConfidence.Rd man/getConfidence2.Rd man/getGTwithRank.Rd man/getRecCHR.Rd man/illiminateShort_FinalPolish.Rd man/markNETtemplate.Rd man/plotGAPdensity.Rd man/shortBreaksToTMP.Rd man/shrinkReprTMP.Rd man/shrinkReprTMP2.Rd man/smoothNET.Rd man/subClonalClusters.Rd man/summaryPlots.Rd man/summaryPlots_perChrom.Rd man/summaryStats.Rd man/updateMeans_FinalPolish.Rd
ndbrown6/GAP documentation built on Feb. 6, 2018, 5 p.m.