Files in ndbrown6/GAP
Genome Alteration Print (GAP)
.gitignore
DESCRIPTION
INDEX
LICENSE
NAMESPACE
R/CBS_breakpoints_and_GAPconstruction.R
R/Centr_CL_annot.R
R/CopyNumber_and_Genotype.R
R/CopyNumber_and_GenotypeWOfitting.R
R/GAPonNET_template.R
R/GAPonNETcoordinates.R
R/GAPplot.R
R/GAPplot_preliminary.R
R/GetGAPtemplateZones.R
R/UniteSEG_TMP.R
R/UniteSEGtmp_Illum.R
R/UniteSEGtmp_one.R
R/adjustTMPstableSubclone.R
R/checkGermHomozygosities.R
R/checkSmallDiscrepancies.R
R/fitShortSubclones.R
R/fitSmallGermHomozyg.R
R/fittingGAP.R
R/getBAFforRecognition.R
R/getCNrank.R
R/getCNwithPrecision.R
R/getCenterClusterGAP.R
R/getConfidence.R
R/getConfidence2.R
R/getGTwithRank.R
R/getRecCHR.R
R/iliminateShort_FinalPolish.R
R/markNETtemplate.R
R/plotGAPdensity.R
R/shortBreaksToTMP.R
R/shrinkReprTMP.R
R/shrinkReprTMP2.R
R/smoothNET.R
R/subClonalClusters.R
R/summaryPlots.R
R/summaryPlots_perChrom.R
R/summaryStats.R
R/updateMeans_FinalPolish.R
R/zzz.R
README.md
data/CytoBand.RData
ext/GAP.png
man/CBS_breakpoints_for_GAPconstruction.Rd
man/Centr_CL_annot.Rd
man/CopyNumber_and_Genotype.Rd
man/CopyNumber_and_GenotypeWOfitting.Rd
man/CytoBand.Rd
man/GAP.Rd
man/GAPonNET_template.Rd
man/GAPonNETcoordinates.Rd
man/GAPplot.Rd
man/GAPplot_preliminary.Rd
man/GetGAPtemplateZones.Rd
man/UniteSEG_TMP.Rd
man/UniteSEGtmp_Illum.Rd
man/UniteSEGtmp_one.Rd
man/adjustTMPstableSubclone.Rd
man/checkGermHomozygosities.Rd
man/checkSmallDiscrepancies.Rd
man/fitShortSubclones.Rd
man/fitSmallGermHomozyg.Rd
man/fittingGAP.Rd
man/getBAFforRecognition.Rd
man/getCNrank.Rd
man/getCNwithPrecision.Rd
man/getCenterClusterGAP.Rd
man/getConfidence.Rd
man/getConfidence2.Rd
man/getGTwithRank.Rd
man/getRecCHR.Rd
man/illiminateShort_FinalPolish.Rd
man/markNETtemplate.Rd
man/plotGAPdensity.Rd
man/shortBreaksToTMP.Rd
man/shrinkReprTMP.Rd
man/shrinkReprTMP2.Rd
man/smoothNET.Rd
man/subClonalClusters.Rd
man/summaryPlots.Rd
man/summaryPlots_perChrom.Rd
man/summaryStats.Rd
man/updateMeans_FinalPolish.Rd
