Man pages for ndbrown6/GAP
Genome Alteration Print (GAP)
| adjustTMPstableSubclone | adjustTMPstableSubclone |
| CBS_breakpoints_for_GAPconstruction | CBS_breakpoints_for_GAPconstruction |
| Centr_CL_annot | Centr_CL_annot |
| checkGermHomozygosities | checkGermHomozygosities |
| checkSmallDiscrepancies | checkSmallDiscrepancies |
| CopyNumber_and_Genotype | CopyNumber_and_Genotype |
| CopyNumber_and_GenotypeWOfitting | CopyNumber_and_GenotypeWOfitting |
| CytoBand | CytoBand |
| fitShortSubclones | fitShortSubclones |
| fitSmallGermHomozyg | fitSmallGermHomozyg |
| fittingGAP | fittingGAP |
| GAP | Genome Alteration Print (GAP) |
| GAPonNETcoordinates | GAPonNETcoordinates |
| GAPonNET_template | GAPonNET_template |
| GAPplot | GAPplot |
| GAPplot_preliminary | GAPplot_preliminary |
| getBAFforRecognition | getBAFforRecognition |
| getCenterClusterGAP | getCenterClusterGAP |
| getCNrank | getCNrank |
| getCNwithPrecision | getCNwithPrecision |
| getConfidence | getConfidence |
| getConfidence2 | getConfidence2 |
| GetGAPtemplateZones | GetGAPtemplateZones |
| getGTwithRank | getGTwithRank |
| getRecCHR | getRecCHR |
| illiminateShort_FinalPolish | illiminateShort_FinalPolish |
| markNETtemplate | markNETtemplate |
| plotGAPdensity | plotGAPdensity |
| shortBreaksToTMP | shortBreaksToTMP |
| shrinkReprTMP | shrinkReprTMP |
| shrinkReprTMP2 | shrinkReprTMP2 |
| smoothNET | smoothNET |
| subClonalClusters | subClonalClusters |
| summaryPlots | summaryPlots |
| summaryPlots_perChrom | summaryPlots_perChrom |
| summaryStats | summaryStats |
| UniteSEG_TMP | UniteSEG_TMP |
| UniteSEGtmp_Illum | UniteSEGtmp_Illum |
| UniteSEGtmp_one | UniteSEGtmp_one |
| updateMeans_FinalPolish | updateMeans_FinalPolish |
