NEWS.md

In ndhutso/geneSummary: Summarize GEOquery data

geneSummary 0.9999.3.0007

fix runShiny

geneSummary 0.9999.3.0006

add some comments

geneSummary 0.9999.3.0005

fixed output on empty or wrongly formatted data to a blank page, allowing access to other data tables under the same accession ID

geneSummary 0.9999.3.0004

fix bug where 2 filters at a time will be added for RSE data

geneSummary 1.0.3.0003

fix for multiple inputs

geneSummary 1.0.3.0002

fix for attaching all required packages

geneSummary 1.0.3.0001

fix filterTbl for multiple numeric filters

geneSummary 1.0.3.0000

update save function to work with RSE data

geneSummary 1.0.2.0002

fix RSE data so that it updates table when new accession ID's are inputed

geneSummary 1.0.2.0001

fix for save function with GEO data

geneSummary 1.0.2.0000

change filterTbl to work with RSE data and improve it to work with more general data tables

geneSummary 1.0.1.0001

alter Shiny to use new function

geneSummary 1.0.1.0000

start adding separate functions for recount2 data

geneSummary 1.0.0.0000

first release version

geneSummary 0.3.1.0002

fixed all filters for long data format

geneSummary 0.3.1.0001

multiple numerical filters can be used

geneSummary 0.3.1.0000

numerical filter can be used on one sample's expression data

geneSummary 0.3.0.0005

make it so that geneExpression tables only have 2 options for filters

geneSummary 0.3.0.0004

only use inputs that exist for filtering

geneSummary 0.3.0.0003

save function fixed

geneSummary 0.3.0.0002

fix input reset when number of filters is changed

geneSummary 0.3.0.0001

multiple entries per filter

geneSummary 0.3.0.0000

multiple filter usage

geneSummary 0.2.1.0001

use one filter at one time

geneSummary 0.2.1.0000

ui set up for filtering

geneSummary 0.2.0.0004

fix long format bug

geneSummary 0.2.0.0003

create new reactive functions for repeated lines in Shiny.R

geneSummary 0.2.0.0002

use melt function recommended from Eduardo to create long format

geneSummary 0.2.0.0001

first attempt at allowing user to select long data format for gene expression data

geneSummary 0.1.5.0002

graphing fixes

geneSummary 0.1.5.0001

update save feature to work on Windows

geneSummary 0.1.5.0000

save feature includes choosing directory to save data in

geneSummary 0.1.4.0000

add a function to run Shiny app

geneSummary 0.1.3.0017

implement sample name search

geneSummary 0.1.3.0016

improved file naming and directory generation in save function

geneSummary 0.1.3.0015

remove unneeded data set name input from extraction functions and app, fix graphing

geneSummary 0.1.3.0014

improved Shiny app

geneSummary 0.1.3.0014

first iteration of working Shiny

geneSummary 0.1.3.0013

fixes for graphs

geneSummary 0.1.3.0012

fix bug for singular data sets, first working version of save function

geneSummary 0.1.3.0011

delete unneeded code in extraction functions that was aimed at handling multiple data sets but was never used, fixes for extraction functions

geneSummary 0.1.3.0010

more fixes to multiple data set generation in extExp, convert extGene and extSample to analyze multiple data sets, fixes to Shiny to display multiple data sets

geneSummary 0.1.3.0009

convert box plot to ggplot

geneSummary 0.1.3.0008

fixed symbol column generation for extExp

geneSummary 0.1.3.0007

first fix for long data inputs for extExp

geneSummary 0.1.3.0006

first version of graph implementation, fix for one version of inputs for extExp

geneSummary 0.1.3.0005

number of inputs change with type of table, more progress on implementing graphs, change graph functions so they return the graph

geneSummary 0.1.3.0004

new fix for cleaning up column names in extExp

geneSummary 0.1.3.0003

delete preceding update

geneSummary 0.1.3.0002

clean up column names for data table output of extExp

geneSummary 0.1.3.0001

add geneSymbol input for extGene, add more inputs for Shiny interface

geneSummary 0.1.3.0000

fix extGene and extSample when no data name is entered and implement first version of Shiny interface

geneSummary 0.1.2.0010

change bar to ggplot

geneSummary 0.1.2.0009

fix box and tidy up hist and compare

geneSummary 0.1.2.0008

fix barplot x labels

geneSummary 0.1.2.0007

update hist to use Biobase data

geneSummary 0.1.2.0006

add fix to hist

geneSummary 0.1.2.0005

start phasing out analyze

geneSummary 0.1.2.0004

split up compare and visualization

geneSummary 0.1.2.0003

update analyze to use Biobase data

geneSummary 0.1.2.0002

updates and fixes for extraction functions

geneSummary 0.1.2.0001

fixes to Biobase conversion

geneSummary 0.1.2.0000

import Biobase

geneSummary 0.1.1.0002

implement fixes to make functions work together in main()

geneSummary 0.1.1.0001

write documentation with roxygen and update function input and output so that they work together in main

geneSummary 0.1.1.0000

separate out functions

geneSummary 0.1.0.0000

initial commit

• Added a NEWS.md file to track changes to the package.

ndhutso/geneSummary documentation built on Nov. 4, 2019, 8:43 p.m.