optimGD: Optimizes enhancer model
In ndukler/superEnhancerModelR: superEnhancerModelR
Description
Arguments
Examples
Description
Runs optimization method on enhancer model
Arguments
x
enhancerDataObject
Examples
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## Create a test design data.frame
design=expand.grid(E1=c(0,1),E2=c(0,1),E3=c(0,1))
## Create fake expression data
expression=c(0.001,0.2,0.3,0.7,0.4,0.8,0.6,1)*100
## Create activity function
actFun=formula(~E1+E2+E3+E1:E2)
edo = enhancerDataObject(expression,design,actFun)
ndukler/superEnhancerModelR documentation built on May 17, 2019, 8:18 p.m.
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Description Arguments Examples
Description
Runs optimization method on enhancer model
Arguments
x |
enhancerDataObject |
Examples
1 2 3 4 5 6 7 | ## Create a test design data.frame
design=expand.grid(E1=c(0,1),E2=c(0,1),E3=c(0,1))
## Create fake expression data
expression=c(0.001,0.2,0.3,0.7,0.4,0.8,0.6,1)*100
## Create activity function
actFun=formula(~E1+E2+E3+E1:E2)
edo = enhancerDataObject(expression,design,actFun)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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