Files in ne1s0n/MTGOsc
MTGO analysis applied to Single Cell data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
MTGOsc.Rproj
NAMESPACE
R/MTGOsc.R
R/lib.R
R/store_data_in_package.R
R/visNetTest_redone.R
README.Rmd
README.md
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_BasalepithelialcellBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_Epithelialcell_Upk3ahighBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_MesenchymalstromalcellBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_SmoothmusclecellBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_Stromalcell_Car3highBladder.csv
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_Stromalcell_Car3highBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_Stromalcell_DpthighBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_UmbrellacellBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_UrotheliumBladder.txt
ReactomeErichment/ReactomePA.cluster_bladder_var.genes.only_cluster_VascularendothelialcellBladder.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Bcell_Ly6dhighPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Bcell_Vpreb3highPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Erythroblast_Car2highPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Macrophage_AcehighPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Macrophage_S100a4highPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Monocyte_ElanehighPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Monocyte_F13a1highPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_NKcell_GzmahighPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Neutrophil_CamphighPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Neutrophil_Il1bhighPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Tcell_Gm14303highPeripheral_Blood.txt
ReactomeErichment/ReactomePA.cluster_peripheralBlood_var.genes.only_cluster_Tcell_Trbc2highPeripheral_Blood.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_BasalepithelialcellBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_Epithelialcell_Upk3ahighBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_MesenchymalstromalcellBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_SmoothmusclecellBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_Stromalcell_Car3highBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_Stromalcell_DpthighBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_UmbrellacellBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_UrotheliumBladder.txt
ReactomeErichment/cluster_bladder_var.genes.only_cluster_VascularendothelialcellBladder.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Bcell_Ly6dhighPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Bcell_Vpreb3highPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Erythroblast_Car2highPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Macrophage_AcehighPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Macrophage_S100a4highPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Monocyte_ElanehighPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Monocyte_F13a1highPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_NKcell_GzmahighPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Neutrophil_CamphighPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Neutrophil_Il1bhighPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Tcell_Gm14303highPeripheral_Blood.txt
ReactomeErichment/cluster_peripheralBlood_var.genes.only_cluster_Tcell_Trbc2highPeripheral_Blood.txt
data/bladder.rda
data/gGT.rda
data/markers.rda
data/mouse.pathways.rda
doc/MTGOsc.vignette.R
doc/MTGOsc.vignette.Rmd
doc/MTGOsc.vignette.html
doc/MTGOsc.vignette.pdf
inst/java/MTGO.jar
man/call.MTGO.Rd
man/clean.filename.Rd
man/coexpr_propr.Rd
man/dummy.function.Rd
man/export.network.modules.Rd
man/export.network.single.module.Rd
man/get.filenames.Rd
man/thinning_abs_threshold.Rd
man/thinning_percentile.Rd
man/thinning_scale_free.Rd
man/verify.java.Rd
man/write.coexpressionMatrix.Rd
man/write.dictionary.Rd
man/write.edges.Rd
man/write.paramFile.Rd
vignettes/MTGOsc.vignette.Rmd
