Files in neellab/simem

Prediction of differential gene essentiality from pooled phenotypic screens (eg: siRNA, shRNA, CRISPR/Cas9 screens) using linear mixed effect models.

.gitignore

DESCRIPTION

LICENSE

R/data_format_lib.R R/model_lib.R R/plot_lib.R

R/simem_code.zip

R/simem_lib.R README.md

data/annotations/achilles_hairpin_annotations.txt

data/annotations/achilles_hairpin_annotations.txt.zip

data/annotations/cell_line_subtypes.txt

data/annotations/cell_line_subtypes.txt.zip

data/annotations/hairpin_annotations.txt

data/annotations/hairpin_annotations.txt.zip

data/expression/ccle_achilles_expression.txt

data/expression/ccle_achilles_expression.txt.zip

data/rnaseq/breast_rnaseq_qn.txt

data/rnaseq/breast_rnaseq_qn.txt.zip

documentation/markdown/continuous_analysis.Rmd

documentation/markdown/continuous_analysis.html

documentation/markdown/continuous_analysis_expression_essentiality_achilles_2011.Rmd

documentation/markdown/continuous_analysis_expression_essentiality_achilles_2011.html

documentation/markdown/format_data.Rmd

documentation/markdown/format_data.html

documentation/markdown/ovarian_analysis_cowley_achilles_2014.Rmd

documentation/markdown/ovarian_analysis_cowley_achilles_2014.html

documentation/markdown/tutorial_R/cheung_achilles_continuous_expression_essentiality.R documentation/markdown/tutorial_R/cowley_achilles_ovarian_two_class_analysis.R documentation/markdown/tutorial_R/marcotte_ccnd1_continuous_analysis.R documentation/markdown/tutorial_R/marcotte_her2_two_class_analysis.R documentation/markdown/two_class_analysis.Rmd

documentation/markdown/two_class_analysis.html

documentation/markdown/two_class_analysis_per_gene.Rmd documentation/markdown/weights_precision.Rmd

documentation/markdown/weights_precision.html

neellab/simem documentation built on May 23, 2019, 1:31 p.m.