API for neobernad/evaluomeR
Evaluation of Bioinformatics Metrics
| Global functions | |
|---|---|
| ATSC | Man page Source code |
| PCASuitability | Man page Source code |
| annotateClustersByMetric | Man page Source code |
| bioMetrics | Man page |
| boot.cluster | Source code |
| checkDirectory | Source code |
| checkIfCanCluster | Source code |
| checkKValue | Source code Source code |
| checkStabilityQualityData | Source code |
| claraCBI | Source code |
| classifdist | Source code |
| cleanDataset | Man page Source code |
| clujaccard | Source code |
| clusterboot | Source code |
| clusterbootWrapper | Source code |
| clusteringWrapper | Source code |
| compare_with_gold_standard | Source code |
| createSE | Source code |
| createSEList | Source code |
| dbscanCBI | Source code |
| determineNumberOfFactors | Man page Source code |
| dfStats | Source code |
| disthclustCBI | Source code |
| disthclusttreeCBI | Source code |
| distnoisemclustCBI | Source code |
| evaluomeRSupportedCBI | Man page Source code |
| fAnova | Source code |
| flemixModel | Source code |
| getDataQualityRange | Man page Source code |
| getFormattedK | Source code |
| getLargestSilWidth | Source code |
| getMeasureValue | Source code |
| getMetricRangeByCluster | Man page Man page Source code |
| getMetricsRelevancy | Man page Source code |
| getOptimalKValue | Man page Source code |
| getRSKCAlpha | Man page Source code |
| getRSKCL1Boundry | Man page Source code |
| globalMetric | Man page |
| hclustCBI | Source code |
| hclusttreeCBI | Source code |
| helperGetCBI | Source code |
| insertRow | Source code |
| isReasonable | Source code |
| isString | Source code |
| jaccard.cluster | Source code |
| kmeansCBI | Source code |
| kmeansruns | Source code |
| mahalCBI | Source code |
| mergenormCBI | Source code |
| metricsCorrelations | Man page Source code |
| metrics_pca | Source code |
| metrics_randomforest | Source code |
| noisemclustCBI | Source code |
| ontMetrics | Man page |
| performPCA | Man page Source code |
| plot.clboot | Source code |
| plotMetricsBoxplot | Man page Source code |
| plotMetricsCluster | Man page Source code |
| plotMetricsClusterComparison | Man page Source code |
| plotMetricsMinMax | Man page Source code |
| plotMetricsViolin | Man page Source code |
| plotPCA_fviz_biplot | Man page Source code |
| plotPCA_fviz_screeplot | Man page Source code |
| print.clboot | Source code |
| quality | Man page Source code |
| qualityRange | Man page Source code |
| qualitySet | Man page Source code |
| quiet | Source code |
| removeCorrelations | Man page Source code |
| removeNAValues | Source code |
| removeNonNumericColumns | Man page Source code |
| rnaMetrics | Man page |
| rskcCBI | Source code |
| runMetricsCorrelationIMG | Source code |
| runQualityIndicesSilhouette | Source code |
| runQualityIndicesSilhouetteK_IMG | Source code |
| runQualityIndicesSilhouetteMetric_IMG | Source code |
| runSilhouetteIMG | Source code |
| runSilhouetteTable | Source code |
| runSilhouetteTableRange | Source code |
| runStabilityIndex | Source code |
| runStabilityIndexK_IMG | Source code |
| runStabilityIndexMetric_IMG | Source code |
| runStabilityIndexTableRange | Source code |
| sample.min | Source code |
| sample.range | Source code |
| speccCBI | Source code |
| stability | Man page Source code |
| stabilityRange | Man page Source code |
| stabilitySet | Man page Source code |
| standardizeQualityData | Source code |
| standardizeStabilityData | Source code |
