Files in nephantes/debrowser_bioconductor_release
Interactive Differential Expresion Analysis Browser
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/GOterm.R
R/IQR.R
R/QCSection.R
R/all2all.R
R/barmain.R
R/batcheffect.R
R/boxmain.R
R/condSelect.R
R/dataLoad.R
R/density.R
R/deprogs.R
R/funcs.R
R/gopanel.R
R/heatmap.R
R/help.R
R/histogram.R
R/installpack.R
R/lowcountfilter.R
R/mainScatter.R
R/pca.R
R/plotSize.R
R/plot_props.R
R/prepdata.R
R/server.R
R/startShiny.R
R/ui.R
R/uifuncs.R
README.md
debrowser.Rproj
inst/examples/appAll2All.R
inst/examples/appBarMain.R
inst/examples/appBatchEffect.R
inst/examples/appBoxMain.R
inst/examples/appCondSelect.R
inst/examples/appDEAnalysis.R
inst/examples/appDEWithCond.R
inst/examples/appDataPrep.R
inst/examples/appDensity.R
inst/examples/appHeatmap.R
inst/examples/appHistogram.R
inst/examples/appIQR.R
inst/examples/appLowCountFilter.R
inst/examples/appMain.R
inst/examples/appMainHeatmap.R
inst/examples/appMainHeatmapBar.R
inst/examples/appPCA.R
inst/examples/appUpload.R
inst/extdata/demo/demodata.Rda
inst/extdata/demo/demodata2.Rda
inst/extdata/www/countFile.txt
inst/extdata/www/favicon.ico
inst/extdata/www/images/delete_button.png
inst/extdata/www/images/initial_loading.gif
inst/extdata/www/images/loading.gif
inst/extdata/www/images/loading2.gif
inst/extdata/www/images/loading_start.gif
inst/extdata/www/images/logo.png
inst/extdata/www/metaFile.txt
inst/extdata/www/shinydashboard_additional.css
man/BoxMainPlotControlsUI.Rd
man/IQRPlotControlsUI.Rd
man/actionButton.Rd
man/addDataCols.Rd
man/addID.Rd
man/add_title_pos.Rd
man/all2all.Rd
man/all2allControlsUI.Rd
man/applyFilters.Rd
man/applyFiltersNew.Rd
man/applyFiltersToMergedComparison.Rd
man/barMainPlotControlsUI.Rd
man/batchEffectUI.Rd
man/batchMethod.Rd
man/changeClusterOrder.Rd
man/clustFunParamsUI.Rd
man/clusterData.Rd
man/compareClust.Rd
man/condSelectUI.Rd
man/correctCombat.Rd
man/correctHarman.Rd
man/customColorsUI.Rd
man/cutOffSelectionUI.Rd
man/dataLCFUI.Rd
man/dataLoadUI.Rd
man/deServer.Rd
man/deUI.Rd
man/debrowserIQRplot.Rd
man/debrowserall2all.Rd
man/debrowserbarmainplot.Rd
man/debrowserbatcheffect.Rd
man/debrowserboxmainplot.Rd
man/debrowsercondselect.Rd
man/debrowserdataload.Rd
man/debrowserdeanalysis.Rd
man/debrowserdensityplot.Rd
man/debrowserheatmap.Rd
man/debrowserhistogram.Rd
man/debrowserlowcountfilter.Rd
man/debrowsermainplot.Rd
man/debrowserpcaplot.Rd
man/dendControlsUI.Rd
man/densityPlotControlsUI.Rd
man/distFunParamsUI.Rd
man/drawPCAExplained.Rd
man/fileTypes.Rd
man/fileUploadBox.Rd
man/generateTestData.Rd
man/getAfterLoadMsg.Rd
man/getAll2AllPlotUI.Rd
man/getBSTableUI.Rd
man/getBarMainPlot.Rd
man/getBarMainPlotUI.Rd
man/getBoxMainPlot.Rd
man/getBoxMainPlotUI.Rd
man/getColorShapeSelection.Rd
man/getColors.Rd
man/getCompSelection.Rd
man/getCondMsg.Rd
man/getConditionSelector.Rd
man/getConditionSelectorFromMeta.Rd
man/getCutOffSelection.Rd
man/getDEAnalysisText.Rd
man/getDEResultsUI.Rd
man/getDataAssesmentText.Rd
man/getDataForTables.Rd
man/getDataPreparationText.Rd
man/getDensityPlot.Rd
man/getDensityPlotUI.Rd
man/getDomains.Rd
man/getDown.Rd
man/getDownloadSection.Rd
man/getEnrichDO.Rd
man/getEnrichGO.Rd
man/getEnrichKEGG.Rd
man/getEntrezIds.Rd
man/getEntrezTable.Rd
man/getGOLeftMenu.Rd
man/getGOPlots.Rd
man/getGeneList.Rd
man/getGeneSetData.Rd
man/getGoPanel.Rd
man/getHeatmapUI.Rd
man/getHelpButton.Rd
man/getHistogramUI.Rd
man/getHoverPlots.Rd
man/getIQRPlot.Rd
man/getIQRPlotUI.Rd
man/getIntroText.Rd
man/getJSLine.Rd
man/getKEGGModal.Rd
man/getLeftMenu.Rd
man/getLegendColors.Rd
man/getLegendRadio.Rd
man/getLegendSelect.Rd
man/getLevelOrder.Rd
man/getLoadingMsg.Rd
man/getLogo.Rd
man/getMainPanel.Rd
man/getMainPlotUI.Rd
man/getMainPlotsLeftMenu.Rd
man/getMean.Rd
man/getMergedComparison.Rd
man/getMetaSelector.Rd
man/getMethodDetails.Rd
man/getMostVariedList.Rd
man/getNormalizedMatrix.Rd
man/getOrganism.Rd
man/getOrganismBox.Rd
man/getOrganismPathway.Rd
man/getPCAPlotUI.Rd
man/getPCAcontolUpdatesJS.Rd
man/getPCAexplained.Rd
man/getPCselection.Rd
man/getPlotArea.Rd
man/getProgramTitle.Rd
man/getQAText.Rd
man/getQCLeftMenu.Rd
man/getQCPanel.Rd
man/getSampleDetails.Rd
man/getSampleNames.Rd
man/getSamples.Rd
man/getSearchData.Rd
man/getSelHeat.Rd
man/getSelectInputBox.Rd
man/getSelectedCols.Rd
man/getSelectedDatasetInput.Rd
man/getShapeColor.Rd
man/getStartPlotsMsg.Rd
man/getStartupMsg.Rd
man/getTabUpdateJS.Rd
man/getTableDetails.Rd
man/getTableModal.Rd
man/getTableStyle.Rd
man/getTextOnOff.Rd
man/getToolTipText.Rd
man/getUp.Rd
man/getUpDown.Rd
man/getVariationData.Rd
man/get_conditions_given_selection.Rd
man/get_user_info.Rd
man/heatmapControlsUI.Rd
man/heatmapJScode.Rd
man/hideObj.Rd
man/histogramControlsUI.Rd
man/installpack.Rd
man/kmeansControlsUI.Rd
man/lcfMetRadio.Rd
man/loadpack.Rd
man/logSliderJScode.Rd
man/mainPlotControlsUI.Rd
man/mainScatterNew.Rd
man/niceKmeans.Rd
man/normalizationMethods.Rd
man/palUI.Rd
man/panel.cor.Rd
man/panel.hist.Rd
man/pcaPlotControlsUI.Rd
man/plotData.Rd
man/plotMarginsUI.Rd
man/plotSizeMarginsUI.Rd
man/plotSizeUI.Rd
man/plot_pca.Rd
man/prepDEOutput.Rd
man/prepDataContainer.Rd
man/prepGroup.Rd
man/prepHeatData.Rd
man/prepPCADat.Rd
man/push.Rd
man/removeCols.Rd
man/round_vals.Rd
man/runDE.Rd
man/runDESeq2.Rd
man/runEdgeR.Rd
man/runHeatmap.Rd
man/runHeatmap2.Rd
man/runLimma.Rd
man/run_pca.Rd
man/selectConditions.Rd
man/selectGroupInfo.Rd
man/selectedInput.Rd
man/sepRadio.Rd
man/setFilterParams.Rd
man/setFilterParamsNew.Rd
man/showObj.Rd
man/startDEBrowser.Rd
man/textareaInput.Rd
man/togglePanels.Rd
man/whitelist.Rd
tests/test-demo.R
tests/test-deseq.R
tests/test-null.R
tests/test-ui.R
vignettes/DEBrowser.R
vignettes/DEBrowser.Rmd
vignettes/DEBrowser.html
vignettes/DEBrowser.md
