getPCAexplained: getPCAexplained

Description Usage Arguments Value Examples

Description

Creates a more detailed plot using the PCA results from the selected dataset.

Usage

1
getPCAexplained(datasetInput = NULL, pca_data = NULL, input = NULL)

Arguments

datasetInput,

selected data

pca_data,

from user

input,

input params

Value

explained plot

Examples

1
2
3
4
5
6
7
load(system.file("extdata", "demo", "demodata.Rda", package="debrowser"))
input<-c()
input$qcplot<-"pca"
input$col_list<-colnames(demodata[,1:6])
dat <- getNormalizedMatrix(demodata[,1:6])
pca_data <- run_pca(dat)
x <- getPCAexplained(dat, pca_data, input)

nephantes/debrowser_bioconductor_release documentation built on May 29, 2019, 7:15 a.m.