afni_3dresample: AFNI 3dresample function

In neuroconductor-devel-releases/afnir: Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages')

Description

Wrapper for AFNI 3dresample function

Usage

afni_3dresample(file, bound_type = NULL, dxyz = NULL, orient = NULL,
  resample_mode = c("NN", "Li", "Cu", "Bk"), master = NULL,
  outfile = NULL, retimg = TRUE, opts = "", ...)

resample(...)

Arguments

file	nifti object or NIfTI filename.
bound_type	specify which boundary is preserved, options are "FOV" (default if NULL) or "SLAB"
dxyz	resample to new dimensions for x, y, and z-directions
orient	new axis order. The orientation code is a 3 character string, where the characters come from the respective sets A,P, I,S, L,R. For example LPI makes the x-axis is Left-to-Right, the y-axis is Posterior-to-Anterior, and the z-axis is Inferior-to-Superior.
resample_mode	Resampling method. The options are for 'Nearest Neighbor', 'Linear', 'Cubic' and 'Blocky' interpolation, respectively.
master	a filename of an image, which the input file is aligned to (not doing registration, but takes orientation and pixel dimension information)
outfile	Output filename (should not have an extension)
retimg	Should an image be returned (TRUE) or a filename?
opts	Additional options passed to 3dresample
...	additional arguments to afni_3dAFNItoNIFTI

Value

Output filename of the brik

neuroconductor-devel-releases/afnir documentation built on May 6, 2020, 3:22 p.m.