palm: this is an R wrapper function for PALM it has limited...

In neuroconductor-devel-releases/pbj: Parametric Bootstrap Joint Testing Procedures for Neuroimaging

Description

this is an R wrapper function for PALM it has limited functionality for the features that PALM offers

Usage

palm(i, m, s = NULL, d, o, C = NULL, Cstat = "extent", tc = NULL,
  f = NULL, fonly = TRUE, n = 10000, eb = NULL, within = NULL,
  whole = NULL, ee = TRUE, T = FALSE, noniiclass = TRUE,
  logp = TRUE)

Arguments

i	vector of strings pointing to input images or a single 4d nifti string.
m	mask file.
s	vector of strings pointing to input surfaces or a single 4d surface.
d	design matrix as a data frame or csv file.
o	output directory and prefix.
C	cluster forming threshold as a Z-value
Cstat	cluster statistic
tc	T-contrast matrix that randomise takes as matrix, data frame, or csv.
f	F-contrast matrix that randomise takes, as matrix data frame, or csv.
fonly	only run the F-tests.
n	number of permutations to run.
eb	exchangeability blocks (not functional).
within	not functional.
whole	not functional.
ee	exchangeable errors assumed.
T	Run TFCE.
noniiclass	Allow gzipped niftis.
logp	Compute log10p-values.

Value

Returns a string of the command that was evaluated.

neuroconductor-devel-releases/pbj documentation built on Oct. 30, 2020, 7:06 a.m.