Files in neuroconductor-devel/neurobase

'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects

.Rbuildignore

.github/workflows/autoci.yml

.github/workflows/autoci_pkgdown.yml

.gitignore

.travis.yml

CRAN-RELEASE

DESCRIPTION

NAMESPACE

NEWS.md R/applyEmptyImageDimensions.R R/boxplot.nifti.R R/breaker.R R/check_mask.R R/check_nifti.R R/check_nifti_header.R R/check_outfile.R R/checkimg.R R/checknii.R R/checkniigz.R R/cog.R R/copyNIfTIHeader.R R/cut.R R/density.nifti.R R/dicer.R R/double_ortho.R R/dropEmptyImageDimensions.R R/emptyImageDimensionsMask.R R/ensure_array.R R/fast_dice.R R/fast_readnii.R R/file_imgext.R R/finite_img.R R/flip_img.R R/getEmptyImageDimensions.R R/hist.nifti.R R/images2matrix.R R/img_color_df.R R/img_indices.R R/img_ts_to_list.R R/import_methods.R R/maskEmptyImageDimensions.R R/mask_img.R R/mask_vals.R R/mean.nifti.R R/minmax_img.R R/niftiarr.R R/nii.stub.R R/ortho2.R R/ortho3.R R/ortho_diff.R R/overlay2.R R/parse_img_ext.R R/quantile.nifti.R R/quantile_img.R R/random_nifti.R R/randomize_mask.R R/readNIfTI2.R R/remake_img.R R/remap_filename.R R/replaceEmptyImageDimensions.R R/replace_dropped_dimensions.R R/replace_outside_hull.R R/rescale_img.R R/robust_window.R R/same_dims.R R/separate_img.R R/slice_colour_df.R R/subset_dti.R R/tempimg.R R/window_img.R R/write_nifti.R R/writenii.R R/zero_pad.R R/zlimmer.R R/zscore_img.R README.Rmd README.md

_pkgdown.yml

appveyor.yml

cran-comments.md

docs/404.html

docs/articles/index.html

docs/articles/neurobase.R

docs/articles/neurobase.html

docs/articles/neurobase_files/elevate-section-attrs-2.0/elevate-section-attrs.js

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docs/articles/neurobase_files/header-attrs-2.1.3/header-attrs.js

docs/articles/neurobase_files/jquery-1.11.3/jquery.min.js

docs/articles/nifti_basics.R

docs/articles/nifti_basics.html

docs/articles/nifti_basics_cache/html/__packages

docs/articles/nifti_basics_cache/html/make_dists_0ac09f4fbac80b1c5dc89493d412b811.RData

docs/articles/nifti_basics_cache/html/make_dists_0ac09f4fbac80b1c5dc89493d412b811.rdb

docs/articles/nifti_basics_cache/html/make_dists_0ac09f4fbac80b1c5dc89493d412b811.rdx

docs/articles/nifti_basics_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/nifti_basics_files/figure-html/all_slices-1.png

docs/articles/nifti_basics_files/figure-html/dens-1.png

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docs/articles/nifti_basics_files/figure-html/one_slice_sag-1.png

docs/articles/nifti_basics_files/figure-html/ortho-1.png

docs/articles/nifti_basics_files/figure-html/ortho2-1.png

docs/articles/nifti_basics_files/figure-html/ortho2_large-1.png

docs/articles/nifti_basics_files/figure-html/ortho2_nona-1.png

docs/articles/nifti_basics_files/figure-html/ortho2_noorient-1.png

docs/articles/nifti_basics_files/figure-html/ortho2_rob-1.png

docs/articles/nifti_basics_files/figure-html/ortho2_zlim-1.png

docs/articles/nifti_basics_files/figure-html/ortho_nona-1.png

docs/articles/nifti_basics_files/figure-html/plot_full_eve-1.png

docs/articles/nifti_basics_files/figure-html/plot_mask-1.png

docs/articles/nifti_basics_files/figure-html/plot_red-1.png

docs/articles/nifti_basics_files/figure-html/two_slice-1.png

docs/articles/nifti_basics_files/header-attrs-2.1.3/header-attrs.js

docs/articles/nifti_basics_files/jquery-1.11.3/jquery.min.js

docs/articles/simple_io.html

docs/articles/simple_io_files/elevate-section-attrs-2.0/elevate-section-attrs.js

docs/articles/simple_io_files/figure-html/all_slices-1.png

docs/articles/simple_io_files/figure-html/one_slice_overlay-1.png

docs/articles/simple_io_files/figure-html/one_slice_sag-1.png

docs/articles/simple_io_files/figure-html/ortho2-1.png

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docs/articles/simple_io_files/figure-html/two_slice-1.png

docs/articles/simple_io_files/header-attrs-2.1.3/header-attrs.js

docs/articles/simple_io_files/jquery-1.11.3/jquery.min.js

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/applyEmptyImageDimensions-methods.html

docs/reference/boxplot.nifti-1.png

docs/reference/boxplot.nifti-2.png

docs/reference/boxplot.nifti-3.png

docs/reference/boxplot.nifti.html

docs/reference/breaker.html

docs/reference/check_mask.html

docs/reference/check_mask_fail.html

docs/reference/check_nifti-methods.html

docs/reference/check_nifti_header-methods.html

docs/reference/check_outfile.html

docs/reference/checkimg-methods.html

docs/reference/checknii-methods.html

docs/reference/checkniigz-methods.html

docs/reference/cog.html

docs/reference/colorbar.html

docs/reference/copyNIfTIHeader.html

docs/reference/cut.nifti.html

docs/reference/datatype.html

docs/reference/density.nifti.html

docs/reference/dicer.html

docs/reference/double_ortho.html

docs/reference/dropEmptyImageDimensions.html

docs/reference/emptyImageDimensionsMask.html

docs/reference/ensure_array.html

docs/reference/fast_dice_tab.html

docs/reference/fast_readnii.html

docs/reference/file_imgext.html

docs/reference/finite_img-methods.html

docs/reference/flip_img.html

docs/reference/getEmptyImageDimensions.html

docs/reference/hist.nifti-1.png

docs/reference/hist.nifti-2.png

docs/reference/hist.nifti.html

docs/reference/images2matrix.html

docs/reference/img_colour_df.html

docs/reference/img_indices.html

docs/reference/img_list_to_ts.html

docs/reference/img_ts_to_df.html

docs/reference/img_ts_to_list.html

docs/reference/img_ts_to_matrix.html

docs/reference/index.html

docs/reference/maskEmptyImageDimensions-methods.html

docs/reference/mask_img.html

docs/reference/mask_vals-methods.html

docs/reference/mean.nifti.html

docs/reference/minmax_img-methods.html

docs/reference/multi_overlay-1.png

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docs/reference/multi_overlay-3.png

docs/reference/multi_overlay.html

docs/reference/newnii.html

docs/reference/niftiarr.html

docs/reference/nii.stub.html

docs/reference/ortho2-1.png

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docs/reference/ortho_diff.html

docs/reference/parse_img_ext.html

docs/reference/quantile.nifti.html

docs/reference/quantile_img.html

docs/reference/random_nifti.html

docs/reference/randomize_mask.html

docs/reference/readNIfTI2.html

docs/reference/remake_img.html

docs/reference/remap_filename.html

docs/reference/replaceEmptyImageDimensions-methods.html

docs/reference/replace_dropped_dimensions.html

docs/reference/replace_outside_surface.html

docs/reference/rescale_img.html

docs/reference/robust_window.html

docs/reference/same_dims.html

docs/reference/separate_img-methods.html

docs/reference/slice_colour_df.html

docs/reference/subset_dti-methods.html

docs/reference/tempimg.html

docs/reference/window_img.html

docs/reference/writeNIfTI2.html

docs/reference/write_nifti.html

docs/reference/xyz.html

docs/reference/zero_pad.html

docs/reference/zlimmer.html

docs/reference/zscore_img.html

generic_stat.R generic_stat_maker.R man/applyEmptyImageDimensions-methods.Rd man/boxplot.nifti.Rd man/breaker.Rd man/check_mask.Rd man/check_mask_fail.Rd man/check_nifti-methods.Rd man/check_nifti_header-methods.Rd man/check_outfile.Rd man/checkimg-methods.Rd man/checknii-methods.Rd man/checkniigz-methods.Rd man/cog.Rd man/colorbar.Rd man/copyNIfTIHeader.Rd man/cut.nifti.Rd man/datatype.Rd man/density.nifti.Rd man/dicer.Rd man/double_ortho.Rd man/dropEmptyImageDimensions.Rd man/emptyImageDimensionsMask.Rd man/ensure_array.Rd man/fast_dice_tab.Rd man/fast_readnii.Rd man/file_imgext.Rd man/finite_img-methods.Rd man/flip_img.Rd man/getEmptyImageDimensions.Rd man/hist.nifti.Rd man/images2matrix.Rd man/img_colour_df.Rd man/img_indices.Rd man/img_list_to_ts.Rd man/img_ts_to_df.Rd man/img_ts_to_list.Rd man/img_ts_to_matrix.Rd man/maskEmptyImageDimensions-methods.Rd man/mask_img.Rd man/mask_vals-methods.Rd man/mean.nifti.Rd man/minmax_img-methods.Rd man/multi_overlay.Rd man/newnii.Rd man/niftiarr.Rd man/nii.stub.Rd man/ortho2.Rd man/ortho_diff.Rd man/parse_img_ext.Rd man/quantile.nifti.Rd man/quantile_img.Rd man/random_nifti.Rd man/randomize_mask.Rd man/readNIfTI2.Rd man/remake_img.Rd man/remap_filename.Rd man/replaceEmptyImageDimensions-methods.Rd man/replace_dropped_dimensions.Rd man/replace_outside_surface.Rd man/rescale_img.Rd man/robust_window.Rd man/same_dims.Rd man/separate_img-methods.Rd man/slice_colour_df.Rd man/subset_dti-methods.Rd man/tempimg.Rd man/window_img.Rd man/writeNIfTI2.Rd man/write_nifti.Rd man/xyz.Rd man/zero_pad.Rd man/zlimmer.Rd man/zscore_img.Rd

neurobase.Rproj

tests/testthat.R tests/testthat/test-breaker.R tests/testthat/test-check_mask.R tests/testthat/test-check_outfile.R tests/testthat/test-checkimg.R tests/testthat/test-checknii.R tests/testthat/test-cog.R tests/testthat/test-datatyper.R tests/testthat/test-drop_apply_dims.R tests/testthat/test-file_imgext.R tests/testthat/test-finite_img.R tests/testthat/test-mask_img.R tests/testthat/test-randomize_mask.R tic.R

vignettes/.gitignore

vignettes/neurobase.Rmd vignettes/nifti_basics.Rmd vignettes/simple_io.Rmd

neuroconductor-devel/neurobase documentation built on May 6, 2021, 1:48 p.m.