double_remove_neck: Remove Neck Twice from a Scan

In neuroconductor-releases/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Description

Wrapper for running remove_neck twice, as some images require this if large number of slices of the neck or upper shoulders were scanned

Usage

double_remove_neck(file, template.file, template.mask,
  typeofTransform = "Rigid", rep.value = 0, swapdim = TRUE,
  verbose = TRUE, ret_mask = FALSE, ...)

Arguments

file	File for neck removal - either filename or class nifti
template.file	Template to warp to original image space
template.mask	Mask of template to use as rough brain mask. If template.file is specified, but template.mask is not, then fslbin(file=template.file) is performed.
typeofTransform	Transformation for template to image, passed to ants_regwrite.
rep.value	Value to replace neck slices with
swapdim	Should the dimensions be swapped before registration, and then reset after
verbose	Print out diagnostic messages
ret_mask	Should the mask be returned vs. the image?
...	Additional arguments passed to remove_neck

Value

Object of class nifti

neuroconductor-releases/extrantsr documentation built on Dec. 10, 2019, 12:07 a.m.