Files in neuroconductor-releases/extrantsr
Extra Functions to Build on the 'ANTsR' Package
.Rbuildignore
.gitignore
.noncustom_travis_yaml.yml
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/T1_Registration_function.R
R/ants.extract.R
R/ants.overlay.R
R/antsCopy.R
R/ants_apply_transforms.R
R/ants_bwlabel.R
R/ants_regwrite2.R
R/applyEmptyImageDimensions.R
R/apply_malf_regs.R
R/apply_multi_reg.R
R/bias_correct.R
R/brain_extract.R
R/c3d.R
R/check_ants.R
R/check_nifti.R
R/checkimg_antsImage.R
R/compose_transform_to_file.R
R/corr_img.R
R/cort_thickness.R
R/create_moment.R
R/diff_self.R
R/emptyImageDimensionsMask.R
R/ensure_array.antsImage.R
R/face_removal_mask_ants.R
R/fill_2d_z.R
R/filler.R
R/finite_img.R
R/fslbet_robust.R
R/group_xyz2.R
R/image_func.R
R/image_similarity.R
R/img_cov_matrix.R
R/img_density_entropy.R
R/img_hist_entropy.R
R/img_split.R
R/inpaint.R
R/jacobian.R
R/label_mask.R
R/largest_component.R
R/local_quantile_img.R
R/malf.R
R/malf_registration.R
R/maskEmptyImageDimensions.R
R/mask_img.antsImage.R
R/multi_reg.R
R/multi_rereg.R
R/mutual_information.R
R/n4_4d.R
R/neighborhood.R
R/neighborhood_index.R
R/non_exported.R
R/oMask.R
R/oMath.R
R/oasis.R
R/oro2ants.R
R/ortho2.R
R/otropos.R
R/perona_malik.R
R/pixdim.R
R/preprocess_mri_across.R
R/preprocess_mri_within.R
R/read_transformlist.R
R/reapply_malf.R
R/reg_flip.R
R/reg_flip_img.R
R/reg_whitestripe.R
R/reg_zscore.R
R/remove_neck.R
R/reorder_neighborhood.R
R/reproducible_ants.R
R/resample_image.R
R/resample_to_target.R
R/robust_brain_mask.R
R/scaled_neighborhood.R
R/smooth_image.R
R/smri_preproc.R
R/ss_bias.R
R/subset_4d.R
R/tempants.R
R/transformlist_from_outprefix.R
R/window_img.antsImage.R
R/within_visit_registration.R
R/write_nifti_antsImage.R
R/zero_pad.R
R/zscore_template.R
R/zzz.R
R/zzz_accessors.R
README.md
appveyor.yml
extrantsr.Rproj
man/accessor-methods.Rd
man/ants.extract.Rd
man/ants.overlay.Rd
man/ants2oro.Rd
man/antsCopy.Rd
man/ants_apply_transforms-methods.Rd
man/ants_bwlabel.Rd
man/ants_regwrite.Rd
man/applyEmptyImageDimensions-methods.Rd
man/apply_malf_regs.Rd
man/apply_multi_reg-methods.Rd
man/bias_correct.Rd
man/bias_ss.Rd
man/brain_extract.Rd
man/c3d.Rd
man/check_ants-methods.Rd
man/check_nifti-methods.Rd
man/checkimg-methods.Rd
man/compose_transform_to_file.Rd
man/corr_img.Rd
man/cort_thickness.Rd
man/create_moment.Rd
man/diff_self.Rd
man/double_remove_neck.Rd
man/emptyImageDimensionsMask-methods.Rd
man/face_removal_mask_ants.Rd
man/fill_2d_z.Rd
man/filler.Rd
man/finite_img-methods.Rd
man/fslbet_robust.Rd
man/group_xyz2.Rd
man/image_similarity.Rd
man/img_cov_matrix.Rd
man/img_density_entropy.Rd
man/img_hist_entropy.Rd
man/img_split.Rd
man/inpaint.Rd
man/jacobian_image.Rd
man/label_clusters.Rd
man/label_mask.Rd
man/largest_component.Rd
man/local_quantile_img.Rd
man/makepng.Rd
man/malf.Rd
man/malf_registration.Rd
man/maskEmptyImageDimensions-methods.Rd
man/multi_reg.Rd
man/multi_rereg.Rd
man/mutual_information.Rd
man/my.tab.Rd
man/n4_4d.Rd
man/neighborhood.Rd
man/neighborhood_index.Rd
man/oMask.Rd
man/oMath.Rd
man/oasis.Rd
man/oro2ants.Rd
man/ortho2-methods.Rd
man/otropos.Rd
man/otropos2.Rd
man/perona_malik.Rd
man/pixdim-methods.Rd
man/preprocess_mri_across.Rd
man/preprocess_mri_within.Rd
man/process_filenames.Rd
man/read_transformlist.Rd
man/reapply_malf.Rd
man/reg_flip.Rd
man/reg_flip_img.Rd
man/reg_whitestripe.Rd
man/reg_zscore.Rd
man/registration.Rd
man/remove_neck.Rd
man/reorder_neigh_indices.Rd
man/reproducible_ants.Rd
man/resample_image-methods.Rd
man/resample_to_target-methods.Rd
man/robust_brain_mask.Rd
man/scaled_neighborhood.Rd
man/sim.Rd
man/smooth_image.Rd
man/smri_preproc.Rd
man/ss_bias.Rd
man/stat_img.Rd
man/subset_4d-methods.Rd
man/tempants.Rd
man/transformlist_from_outprefix.Rd
man/within_visit_registration.Rd
man/write_transformlist.Rd
man/zero_pad.Rd
man/zscore_template.Rd
mid_sagittal_align.R
vignettes/.gitignore
vignettes/brain_extract.Rmd
vignettes/brain_extract_files/figure-html/t1_naive_plot-1.png
vignettes/brain_extract_files/figure-html/t1_plot-1.png
