Description Usage Arguments Value
This function performs registration to a T1 template using ANTsR transformation
1 2 3 4 5 6 7 8 | oasis(filename, skull_strip = TRUE, skull_stripfile = NULL,
correct = TRUE, normalize = TRUE, normalize_file = NULL,
retimg = TRUE, outfile = NULL, template.file = file.path(fsldir(),
"data", "standard", "MNI152_T1_1mm_brain.nii.gz"),
interpolator = "LanczosWindowedSinc", other.files = NULL,
other.outfiles = NULL, typeofTransform = "Rigid",
remove.warp = TRUE, outprefix = NULL, bet.opts = "-B -f 0.1 -v",
betcmd = "bet", reproducible = TRUE, seed = 1, ...)
|
filename |
filename of T1 image |
skull_strip |
do skull stripping with FSL BET |
skull_stripfile |
Output skull strip filename |
correct |
do N3 Bias correction |
normalize |
Normalize data using |
normalize_file |
|
retimg |
return a nifti object from function |
outfile |
output filename should have .nii or .nii.gz extension |
template.file |
Filename of template to warp to |
interpolator |
interpolation done for
|
other.files |
Filenames of other iamges to be transformed with the T1 |
other.outfiles |
Output filenames of |
typeofTransform |
type of transformed used, passed to
|
remove.warp |
(logical) Should warping images be deleted? |
outprefix |
Character path of where the warp files should be stored.
Required if |
bet.opts |
Options passed to |
betcmd |
BET command used, passed to |
reproducible |
Sets the seed and
|
seed |
will execute
|
... |
arguments to |
NULL or object of class nifti for transformed T1 image
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