accessor-methods | Extract Image Attributes 'origin' from 'antsImage' or 'nifti'... |
ants2oro | Convert Between antsImage and nifti objects |
ants_apply_transforms-methods | Apply ANTs transforms to nifti images |
ants_bwlabel | ANTs BWLabel Clusters of Certain Size |
antsCopy | Copy Information of One Image to Another |
ants.extract | Extract values from antsImage from mask |
ants.overlay | Plot Lightbox for antsImage |
ants_regwrite | Registration to a Template |
applyEmptyImageDimensions-methods | Apply Subsetting from Empty Image Dimensions |
apply_malf_regs | Apply MALF Registrations |
apply_multi_reg-methods | Check if antsImage or read in |
bias_correct | N3 or N4 Correct |
bias_ss | Bias Field Correct then Skull Strip |
brain_extract | Wrapper for ANTs brain extraction |
c3d | Convert NeuroImage Types |
check_ants-methods | Check if antsImage or read in |
checkimg-methods | Force object to filename |
check_nifti-methods | Check if nifti image or read in a nifti image |
compose_transform_to_file | Compose Transforms from ANTsR to a composite file |
corr_img | Neighborhood Correlation Image |
cort_thickness | Compute cortical thickness using Kelly Kapowski (ANTsR) |
create_moment | Create Neighborhood Momemts of an Image |
diff_self | Flipped Difference Image |
double_remove_neck | Remove Neck Twice from a Scan |
emptyImageDimensionsMask-methods | Make Mask from Empty Image Dimensions |
face_removal_mask_ants | Face Removal Mask using ANTs Registration |
fill_2d_z | Image Mask Filler over each slice in Z-direction |
filler | Image Mask Filler |
finite_img-methods | Finite Image |
fslbet_robust | Robust Skull Stripping with COG estimation and Bias... |
group_xyz2 | Center of Gravity for Multiple Components/Areas |
image_similarity | Compute Image Similarity Metrics |
img_cov_matrix | Neighborhood Covariance Matrix |
img_density_entropy | Image Entropy using density |
img_hist_entropy | Image Entropy using histograms |
img_split | Split an Image into Multiple Sub-Images |
inpaint | Inpainting of images |
jacobian_image | Image of the Determinant of the Jacobian |
label_clusters | Label Clusters |
label_mask | Label Connected Components |
largest_component | Get Largest Component |
local_quantile_img | Quantile Transform Voxel based on Neighborhood Distribution |
makepng | Non-exported function to make png |
malf | Multi-Atlas Label Fusion |
malf_registration | Multi-Atlas Label Fusion Registration |
maskEmptyImageDimensions-methods | Apply Masking from Empty Image Dimensions |
multi_reg | Multi-Registration |
multi_rereg | Two-Stage Multi-Registration of images |
mutual_information | Calculates Mutual Information on nifti objects |
my.tab | Quick Tabulation for logical vectors |
n4_4d | Four-Dimensional Bias-Field Correction |
neighborhood | Get Neighborhood of Voxels from an Image |
neighborhood_index | Get Neighborhood Matrix of Indices from an Image |
oasis | OASIS Processing Pipeline |
oMask | Get Mask from nifti object |
oMath | Perform iMath on nifti objects |
oro2ants | Convert Between nifti and antsImage |
ortho2-methods | Orthographic Display, added options |
otropos | Run Atropos for nifti objects |
otropos2 | Run Atropos for nifti objects |
perona_malik | Perona-Malik Anisotropic Filter |
pixdim-methods | Extract Image pixdim attribute |
preprocess_mri_across | Preprocess MRI acros visits |
preprocess_mri_within | Within Visit Registration |
process_filenames | Process filenames to ensure nifti and consistency |
read_transformlist | Read Transform List from ANTsR |
reapply_malf | Reapply MALF Operation |
reg_flip | Flip Image with Registration |
reg_flip_img | Flip Image with Registration |
registration | Registration Wrapper function |
reg_whitestripe | WhiteStripe Normalization |
reg_zscore | Z-score Normalization |
remove_neck | Remove Neck from Image |
reorder_neigh_indices | Reorder Voxel Neighborhood |
reproducible_ants | Set reproducible seeds and threads for ANTsR execution |
resample_image-methods | Resample an image |
resample_to_target-methods | Resample an Image to a Target Image |
robust_brain_mask | Robust Brain Mask from Template |
scaled_neighborhood | Get Scaled Neighborhood of Voxels from an Image |
sim | Calculate Overlap Metrics |
smooth_image | Gaussian smooth image using ANTsR |
smri_preproc | Standard MRI Preprocessing |
ss_bias | Skull Strip then Bias Field Correct |
stat_img | Create Statistics Image |
subset_4d-methods | Subset a 4D image |
tempants | Create temporary nii.gz file from antsImage |
transformlist_from_outprefix | Get list of transforms that would likely be made with a... |
within_visit_registration | Within Visit Registration |
write_transformlist | Read Transform List from ANTsR |
zero_pad | Zero pads an image |
zscore_template | Create Z-score-to-Template Image |
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