otropos: Run Atropos for nifti objects

In neuroconductor-releases/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Description

Runs Atropos (a finite mixture model) but with more robust inputs

Usage

otropos(a, x, m = "[0.2,1x1x1]", verbose = TRUE, ...,
  make_mask = TRUE, reset_origin = TRUE)

Arguments

a	Images to segment. Can be a nifti object, antsImage object, character vector, or list of these
x	Mask image. If none is supplied and make_mask = TRUE, then mask is created by first
m	mrf parameters as a string, usually "[smoothingFactor,radius]". Reset for 3D images, compared to 2D default atropos has.
verbose	print diagnostic messages
...	Additional arguments to be passed to atropos
make_mask	Logical indicating if mask should be created if x is missing. Mask is made using getMask with first image of a.
reset_origin	Should antsCopyOrigin be done on the mask?

Value

Result of atropos, but with nifti objects.

neuroconductor-releases/extrantsr documentation built on Dec. 10, 2019, 12:07 a.m.