createJacobianDeterminantImage: createJacobianDeterminantImage

In neuroconductor/ANTsR: ANTs in R: Quantification Tools for Biomedical Images

Description

Compute the jacobian determinant from a transformation file

Usage

createJacobianDeterminantImage(domainImg, tx, doLog = FALSE, geom = FALSE)

Arguments

domainImg	image that defines transformation domain
tx	deformation transformation file name
doLog	return the log jacobian
geom	use the geometric jacobian calculation (boolean)

Value

jacobianImage

Author(s)

BB Avants

Examples

fi<-antsImageRead( getANTsRData("r16") ,2)
mi<-antsImageRead( getANTsRData("r64") ,2)
fi<-resampleImage(fi,c(128,128),1,0)
mi<-resampleImage(mi,c(128,128),1,0)
mytx<-antsRegistration(fixed=fi , moving=mi, typeofTransform = c("SyN") )
jac<-createJacobianDeterminantImage(fi,mytx$fwdtransforms[[1]],1)
# plot(jac)

neuroconductor/ANTsR documentation built on Oct. 11, 2020, 8:14 a.m.