zscore_template: Create Z-score-to-Template Image

In neuroconductor/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Description

Registers an image to a template, subtracts a mean and sd image, and will return the image either in template space or native.

Usage

zscore_template(
  img,
  template.file,
  mean.img,
  sd.img,
  outfile = NULL,
  typeofTransform = "SyN",
  interpolator = "Linear",
  robust = TRUE,
  probs = c(0, 0.999),
  native = TRUE,
  verbose = TRUE,
  ...
)

Arguments

img	Image to be z-scored
template.file	Template file to be registered to. An affine registration will be done usually, so if the image is skull-stripped, use a skull-stripped template and vice versa
mean.img	Mean image to be subtracted
sd.img	SD image to be divded
outfile	Output filename. Will use writenii to write
typeofTransform	Transform for registration. See antsRegistration
interpolator	Interpolator to use, See antsRegistration
robust	Should See robust_window be used on the image
probs	quantiles to constrain the image these define the window sent to robust_window
native	Should a native-space image (default) or template-space image be returned
verbose	Print diagnostic output
...	Options passed to ants_regwrite.

Value

Object of class nifti

neuroconductor/extrantsr documentation built on Sept. 28, 2020, 11:31 a.m.