fmriu.io.collection.open_graphs: Open Graphs Collection
In neurodata/fmriutils: fMRI Derivative Utilities

Description Usage Arguments Value

A utility to open graphs information from multiple datasets. Assumes data is formatted by the BIDs spec. This means that derivatives are named as follows: sub-[###]_task-[abcde]_ses-[###]_run-[###]_(generic info).file

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fmriu.io.collection.open_graphs(basepath, datasets = "", atlases = "",
  gname = "connectomes", fmt = "graphml", verbose = FALSE,
  rtype = "list", flatten = FALSE)

`basepath:`	[1] a path to a properly spec'd directory. See the example in 'fmriutils.html' for details.
`datasets:`	[d] the datasets as a vector. Note that we expect a folder '<basepath>/<dataset>' for 'dataset in datasets'.
`atlases:`	[a] the atlases as a vector. Note that we expect a folder '<basepath>/<dataset>/<gname>/<atlas>' for 'atlas in atlases'.
`gname='connectomes':`	the folder name in which graphs are stored. Suggested options are ['connectomes', 'graphs'].
`fmt="graphml"`	a parameter indicating the format for graphs to be read in as. Options are ['graphml', 'edgelist'].
`verbose=FALSE:`	whether to print the id of the scan being loaded.
`rtype='list':`	the type of output to return. Options are 'list' and 'array'. Note that if rtype is 'array', all of the graphs must be derived from parcellations with the same number of vertices.
`flatten=FALSE`	a parameter to flatten the array if the rtype is set to 'array'. TRUE If rtype == 'array', then returns an [n x r^2] array FALSE If rtype == 'array', then returns an [n x r x r] array