fmriu.io.open_timeseries: Open Timeseries

In neurodata/fmriutils: fMRI Derivative Utilities

Description

A utility to open timeseries information from a dataset. Assumes data is formatted by the BIDs spec. This means that derivatives are named as follows: sub-[###]_task-[abcde]_ses-[###]_run-[###]_(generic info).file

Usage

fmriu.io.open_timeseries(fnames, dataset_id = "", atlas_id = "",
  verbose = FALSE, rtype = "list")

Arguments

fnames:	[n] a vector of filenames, with separation by underscores IE, dataset_subject_run_(other information).rds. Alternatively, a path to a directory containing rds files of an appropriate naming convention. See 'fmriutils' vignette for details.
dataset_id:	[1] the dataset id in the filenames.
atlas_id:	[1] the atlas id in the filenames.
verbose=FALSE:	whether to print the id of the scan being loaded.
rtype='list':	the type of output to return. Options are 'list' and 'array'.

Value

ts: [[n]][nt, nroi] the ts loaded from the specified file names. list of n subjects, each with nt timesteps and nroi rois

dataset: [n] a vector of the dataset ids for each subject.

subjects: [n] the subject ids

sessions: [n] the session ids

tasks: [n] the task ids

runs: [n] the run ids

neurodata/fmriutils documentation built on May 14, 2019, 2:30 p.m.