Man pages for neurogenomics/MultiEWCE
Multi-Scale Target Explorer
| add_ctd | Add CellTypeDataset |
| add_logfc | Add log fold-change |
| add_symptom_results | Add symptom results |
| agg_results | Aggregate results |
| celltype_maps | Cell-type maps |
| correlation_heatmap | Plot heatmap |
| create_dt | Interactive DT |
| ewce_para | EWCE parallel |
| example_targets | Example prioritised targets |
| extract_help | Extract help |
| gen_overlap | Generate overlap |
| gen_results | Generate results |
| get_bg | Get background genes |
| get_data | Get remote data |
| get_target_branches | Get target branches |
| get_unfinished_list_names | Get unfinished list names |
| get_valid_gene_lists | get valid gene lists |
| ggnetwork_plot_full | Create interactive network plot start to finish |
| is_not_analysed | Is not analysed? |
| load_example_CTD | Load example CTD (Descartes) |
| load_example_results | Load example results |
| map_celltype | Map cell type |
| map_tissue | Map cell type |
| merge_results | Merge results |
| messager | Print messages |
| plot_ | Plot functions |
| plot_bar_dendro | Plot bar dendrogram |
| plot_bar_dendro_facets | Plot bar branches |
| plot_bar_summary | Summary plot |
| plot_celltype_severity | Plot cell type severity |
| plot_congenital_annotations | Plot congenital annotations |
| plot_differential_outcomes | Plot differential outcomes |
| plot_differential_outcomes_heatmap | Plot differential outcomes: heatmap |
| plot_frequency_bar | Gene and phenotype frequencies bar plot |
| plot_frequency_histogram | Gene and phenotype frequencies histogram |
| plot_ontology_levels | Plot ontology levels |
| plot_report | Report plot |
| plot_results_distributions | Plot results distributions |
| plot_ttd | Plot TTD |
| predict_celltypes | Predict cell types |
| prioritise_targets | Prioritise target genes |
| prioritise_targets_grid | Prioritise targets grid |
| prioritise_targets_network | Prioritise targets network |
| run_congenital_enrichment | Run congenital enrichment analyses |
| run_phenomix | Run phenomix |
| stopper | Stop messages |
| subset_phenos | Subset RD EWCE results |
| subset_results | Subset EWCE results |
| summarise_results | Summarise results |
| terminal_celltypes | Terminal cell types |
| test_target_celltypes | Test target cell types |
| tissue_maps | Anatomy maps |
| ttd_check | Gene therapy targets |
| validate_associations_correlate_ctd | Validate associations: correlate CellTypeDataset |
| validate_associations_mkg | Validate associations with the Monarch Knowledge Graph |
