get_unfinished_list_names: Get unfinished list names

In neurogenomics/MultiEWCE: Multi-Scale Target Explorer

Get unfinished list names

Description

Gets the unfinished gene list names. It reads the file names in the results directory and uses this to deduce which gene lists have already been analysed. This means you can pause the analysis of multiple gene lists and it will not re-analyse the already completed ones when you start again.

Usage

get_unfinished_list_names(list_names, save_dir_tmp)

Arguments

list_names	character vector of gene list names.
save_dir_tmp	Folder to save intermediate results files to (one file per gene list). Set to NULL to skip saving temporary files.

Value

A character vector of list_names that still need to be analysed.

Examples

gene_data <- HPOExplorer::load_phenotype_to_genes()
list_names <- unique(gene_data$hpo_id)[seq(3)]
save_dir_tmp <- file.path(tempdir(),"results")
ctd <- load_example_ctd()
res_files <- ewce_para(ctd = ctd,
                       gene_data = gene_data,
                       list_names = list_names,
                       reps = 10,
                       save_dir_tmp = save_dir_tmp)
unfinished <- get_unfinished_list_names(list_names = gene_data$hpo_id,
                                        save_dir_tmp = save_dir_tmp)

neurogenomics/MultiEWCE documentation built on Sept. 28, 2024, 2:27 a.m.