plot_frequency_bar: Gene and phenotype frequencies bar plot

In neurogenomics/MultiEWCE: Multi-Scale Target Explorer

Gene and phenotype frequencies bar plot

Description

Plot the frequency of gene-phenotype and phenotype-disease associations.

Usage

plot_frequency_bar(
  results = load_example_results(),
  phenotype_to_genes = HPOExplorer::load_phenotype_to_genes(),
  allow.cartesian = TRUE,
  show_plot = FALSE,
  verbose = TRUE
)

Arguments

results	The cell type-phenotype enrichment results generated by gen_results and merged together with merge_results
phenotype_to_genes	Output of load_phenotype_to_genes mapping phenotypes to gene annotations.
allow.cartesian	See allow.cartesian in [.data.table.
show_plot	Print the plot after it's been generated.
verbose	Print messages.

Value

ggplot object

Examples

results <- load_example_results()[seq(2500),]
fp_res <- plot_frequency_bar(results=results)

neurogenomics/MultiEWCE documentation built on Sept. 28, 2024, 2:27 a.m.