check_col_order: Ensure that the first three columns are SNP, CHR, BP in that...
In neurogenomics/MungeSumstats: Standardise summary statistics from GWAS
View source: R/check_col_order.R
check_col_order R Documentation
Ensure that the first three columns are SNP, CHR, BP in that order and
then A1, A2 if present
Description
Ensure that the first three columns are SNP, CHR, BP in that order and
then A1, A2 if present
Usage
check_col_order(sumstats_dt, path)
Arguments
sumstats_dt
data table obj of the summary statistics file for the GWAS
path
Filepath for the summary statistics file to be formatted
Value
list containing sumstats_dt, the modified summary statistics
data table object
neurogenomics/MungeSumstats documentation built on Aug. 10, 2024, 5:59 a.m.
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View source: R/check_col_order.R
| check_col_order | R Documentation |
Ensure that the first three columns are SNP, CHR, BP in that order and then A1, A2 if present
Description
Ensure that the first three columns are SNP, CHR, BP in that order and then A1, A2 if present
Usage
check_col_order(sumstats_dt, path)
Arguments
sumstats_dt |
data table obj of the summary statistics file for the GWAS |
path |
Filepath for the summary statistics file to be formatted |
Value
list containing sumstats_dt, the modified summary statistics data table object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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