Description Usage Arguments Value
Imputes missing genotype data using conditional genotype probabilities derived from a Hidden Markov Model. Founder genotypes are then imputed from the conditional genotype probabilities in the progeny. Then progeny genotypes are imputed using the imputed founder genotypes.
1 2 3 |
cross |
An object of class |
prob.threshold |
The minimum conditional genotype probability to declare a site as having been inherited from a certain parent. |
type |
The genotype output type. Can be |
step |
See |
off.end |
See |
error.prob |
See |
stepwidth |
See |
map.functions |
See |
The cross
object is returned with the additional item imputed
,
which contains the following information:
Some measures on the imputed genotypes, including the proportion of missing data
The imputed founder genotypes
The imputed progeny genotypes
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