prepare_dgidb_data: Prepare dgidb drugs for structure mapping
In nf-osi/dtexbuilder: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Description
Generates a formatted CSV that can be used as input into the PubChem Identifier Exchange Service (Input ID list = synonyms, operator type = same CID, Output IDs = InChIs,InChiKey,smiles)
Usage
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prepare_dgidb_data(
dgidb_interactions_url,
omit_sources = c("DrugBank", "ChemblInteractions")
)
Arguments
dgidb_interactions_url
A url of the drug gene interaction database, eg "https://www.dgidb.org/data/monthly_tsvs/2021-Jan/interactions.tsv"
Value
An input tsv for the PubChem Identifier Exchange Service
nf-osi/dtexbuilder documentation built on Dec. 22, 2021, 1:15 a.m.
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Description Usage Arguments Value
Description
Generates a formatted CSV that can be used as input into the PubChem Identifier Exchange Service (Input ID list = synonyms, operator type = same CID, Output IDs = InChIs,InChiKey,smiles)
Usage
1 2 3 4 | prepare_dgidb_data(
dgidb_interactions_url,
omit_sources = c("DrugBank", "ChemblInteractions")
)
|
Arguments
dgidb_interactions_url |
A url of the drug gene interaction database, eg "https://www.dgidb.org/data/monthly_tsvs/2021-Jan/interactions.tsv" |
Value
An input tsv for the PubChem Identifier Exchange Service
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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