MascotParser-class: Class '"MascotParser"'

In nghiavtr/mascotParser: Parse Mascot results file (*.dat) from both PMF and MSMS searches

Objects from the Class

Objects can be created by calls of the form new("MascotParser", ...).

Slots

filename:

Object of class "character" ~~

remarks:

Object of class "character" ~~

boundaryCode:

Object of class "character" ~~

sourcefile:

Object of class "character" ~~

searchType:

Object of class "character" ~~

fastafile:

Object of class "character" ~~

database:

Object of class "character" ~~

enzyme:

Object of class "character" ~~

taxonomy:

Object of class "character" ~~

header:

Object of class "character" ~~

parameters:

Object of class "character" ~~

qmass:

Object of class "numeric" ~~

qexp:

Object of class "numeric" ~~

qcharge:

Object of class "character" ~~

qintensity:

Object of class "numeric" ~~

qmatch:

Object of class "numeric" ~~

qplughole:

Object of class "numeric" ~~

PIHaccessions:

Object of class "character" ~~

PIHhitScores:

Object of class "numeric" ~~

PIHproteinMasses:

Object of class "numeric" ~~

PIHnumHits:

Object of class "numeric" ~~

PIHpeakInfo:

Object of class "list" ~~

MSMSqueryHits:

Object of class "list" ~~

MSMSproteinInfo:

Object of class "character" ~~

MSMSqueryInfo:

Object of class "list" ~~

MSMSnumQuery:

Object of class "numeric" ~~

Methods

getAssignedPeaks

signature(object = "MascotParser"): ...

getKeywordsInfo

signature(object = "MascotParser"): ...

getMSMSqueryInfo

signature(object = "MascotParser"): ...

getPosHits

signature(object = "MascotParser"): ...

getUnassignedPeaks

signature(object = "MascotParser"): ...

parse

signature(object = "MascotParser"): ...

plotSpec

signature(object = "MascotParser"): ...

plotSpecPanel

signature(mz1 = "MascotParser"): ...

setInputfilename

signature(object = "MascotParser"): ...

Examples

showClass("MascotParser")

nghiavtr/mascotParser documentation built on May 23, 2019, 4:42 p.m.