Description Usage Arguments Details Value Author(s) See Also Examples
Use CluPA for alignment for multiple spectra.
1 2 3 4 5 6 | dohCluster(X,
peakList,
refInd = 0,
maxShift = 100,
acceptLostPeak = TRUE,
verbose=TRUE)
|
X |
The spectral dataset in the matrix format in which each row contains a single sample |
peakList |
The peak lists of the spectra |
refInd |
The index of the reference spectrum. |
maxShift |
The maximum number of the points for a shift step. |
acceptLostPeak |
This is an option for users, TRUE is the default value. If the users believe that all the peaks in the peak list are true positive, change it to FALSE. |
verbose |
A boolean value to allow print out process information. |
Use CluPA for alignment for multiple spectra.
The aligned spectra.
Trung Nghia Vu
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 |
res=makeSimulatedData();
X=res$data;
groupLabel=res$label;
peakList <- detectSpecPeaks(X,
nDivRange = c(128),
scales = seq(1, 16, 2),
baselineThresh = 50000,
SNR.Th = -1,
verbose=FALSE
);
resFindRef<- findRef(peakList);
refInd <- resFindRef$refInd;
maxShift = 50;
Y <- dohCluster(X,
peakList = peakList,
refInd = refInd,
maxShift = maxShift,
acceptLostPeak = TRUE, verbose=FALSE);
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.