bioTMLE-class: Constructor for class bioTMLE

In nhejazi/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery

Description

Constructor for class bioTMLE

Value

class biotmle object, sub-classed from SummarizedExperiment.

Examples

library(SummarizedExperiment)
library(biotmleData)
data(illuminaData)

example_biotmle_class <- function(se) {
  call <- match.call(expand.dots = TRUE)
  biotmle <- .biotmle(
    SummarizedExperiment(
      assays = assay(se),
      rowData = rowData(se),
      colData = colData(se)
    ),
    call = call,
    ateOut = as.numeric(rep(NA, 10)),
    tmleOut = as.data.frame(matrix(NA, 10, 10)),
    topTable = as.data.frame(matrix(NA, 10, 10))
  )
  return(biotmle)
}

example_class <- example_biotmle_class(se = illuminaData)

nhejazi/biotmle documentation built on Oct. 15, 2021, 5:46 p.m.